test
mkdir fastqc/0.11.9
cd fastqc/0.11.9
touch dockerfile
dockerfile will look like:
FROM ubuntu:latest
RUN apt-get update && apt-get upgrade
WORKDIR /data
create a docker using build command.
docker build -t neranjan007/fastqc:0.11.9 .
To check the avaliable docker images:
docker images
login to the docker container using:
docker run -it neranjan007/fastqc:0.11.9
Remove images
docker image rm image:tag
OR
docker rmi image:tag
Remove dangling images
docker image prune
docker system prune
# additionally remove any stopped containers and unused images
docker system prune -a
Docker Hub
docker build --tag neranjan007/jq:1.6 jq/1.6/
Docker login
docker push neranjan007/jq:1.6
When testing can use:
docker build --tag mummer:test mummer/4.0.0/ --progress=plain
--progress=plain prints all STDOUT/STDERR is printed to screen can see every command being executed
building specific targets:
docker build --target app --tag hmmer:3.3.2 hmmer/3.3.2/
docker build --target app --tag neranjan007/mummer:4.0.0-ani mummer/4.0.0/ --progress=plain
last updated 2023-08-10