Pinned Repositories
chipseq
ChIP-seq peak-calling, QC and differential analysis pipeline.
clipseq
The primary analysis pipeline for CLIP samples.
cutandrun
Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.
fetchngs
Pipeline to fetch metadata and raw FastQ files from public and private databases
flow-nf
Reusable modules used in Flow
flowbio
A python library for interacting with the Flow API
nextflow.py
Python wrapper around Nextflow.
nfcore-wrappers
Contains wrapper pipelines around nf-core modules
scflow
Complete analysis workflow for single-cell/nuclei RNA-sequencing data.
scrnaseq
A single-cell RNAseq pipeline for 10X genomics data
Goodwright's Repositories
goodwright/nextflow.py
Python wrapper around Nextflow.
goodwright/clipseq
The primary analysis pipeline for CLIP samples.
goodwright/chipseq
ChIP-seq peak-calling, QC and differential analysis pipeline.
goodwright/cutandrun
Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.
goodwright/fetchngs
Pipeline to fetch metadata and raw FastQ files from public and private databases
goodwright/flow-nf
Reusable modules used in Flow
goodwright/flowbio
A python library for interacting with the Flow API
goodwright/imaps-nf
goodwright/nfcore-wrappers
Contains wrapper pipelines around nf-core modules
goodwright/scflow
Complete analysis workflow for single-cell/nuclei RNA-sequencing data.
goodwright/scrnaseq
A single-cell RNAseq pipeline for 10X genomics data
goodwright/differential-analysis
goodwright/flow-demultiplex
The Demultiplex pipeline used in Flow, using Ultraplex.
goodwright/multi-package-containers
Testing building mulled containers for multi-requirement tools.
goodwright/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
goodwright/smrnaseq
A small-RNA sequencing analysis pipeline
goodwright/tools
Python package with helper tools for the nf-core community.
goodwright/ultraplex
Ultra-fast 5' and 3' demultiplexer