Pinned Repositories
Annocript
Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved Domain Database and Nucleotide divisions, Gene Ontology, UniPathways and the Enzyme Commission. It gives information about the longest ORF (using DNA2PEP) and non-coding potential of the sequences (using Portrait). A final heuristic makes Annocript able to identify putative long non-coding RNAs among your transcripts.
Machine-Learning-on-Gene-Expression-Data-for-Staging-Classification-of-Breast-Cancer
Use TCGA data to predict early/late pathologic stage of breast cancer with gene expression data using classification machine learning algorithm, train and test with multiple models, screen and evaluate significant genes from the model
STAR
RNA-seq aligner
tcga_subtype_classification
Detecting cancer subtypes with machine learning.
goohongzi's Repositories
goohongzi/STAR
RNA-seq aligner
goohongzi/tcga_subtype_classification
Detecting cancer subtypes with machine learning.
goohongzi/Annocript
Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved Domain Database and Nucleotide divisions, Gene Ontology, UniPathways and the Enzyme Commission. It gives information about the longest ORF (using DNA2PEP) and non-coding potential of the sequences (using Portrait). A final heuristic makes Annocript able to identify putative long non-coding RNAs among your transcripts.
goohongzi/Machine-Learning-on-Gene-Expression-Data-for-Staging-Classification-of-Breast-Cancer
Use TCGA data to predict early/late pathologic stage of breast cancer with gene expression data using classification machine learning algorithm, train and test with multiple models, screen and evaluate significant genes from the model