Pinned Repositories
bioinformatics
BRAKER
BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET and AUGUSTUS in novel eukaryotic genomes
callPeak
call peaks from DNase-seq data
Chorus2
A pipeline to select oligonucleotides for fluorescence in situ hybridization (Oligo-FISH).
Chorus_perl
A perl implement of Chorus idea. Checkout https://github.com/forrestzhang/Chorus
compile-vim
convert-vcf-to-hapmap
nerdtree-cheat-sheet
paf2delta
convert paf to delta format
gorliver's Repositories
gorliver/nerdtree-cheat-sheet
gorliver/paf2delta
convert paf to delta format
gorliver/bioinformatics
gorliver/BRAKER
BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET and AUGUSTUS in novel eukaryotic genomes
gorliver/callPeak
call peaks from DNase-seq data
gorliver/Chorus2
A pipeline to select oligonucleotides for fluorescence in situ hybridization (Oligo-FISH).
gorliver/Chorus_perl
A perl implement of Chorus idea. Checkout https://github.com/forrestzhang/Chorus
gorliver/compile-vim
gorliver/convert-vcf-to-hapmap
gorliver/csvkit
A suite of utilities for converting to and working with CSV, the king of tabular file formats.
gorliver/deepTools
Tools to process and analyze deep sequencing data.
gorliver/DIANE
Dashboard for the Inference and Analysis of Networks from Expression data
gorliver/ensembl-compara
The Ensembl Compara Perl API and SQL schema
gorliver/entropy
gorliver/maize_v4_TE_annotation
scripts and intermediate files used to annotate TEs in Jiao et al.
gorliver/minineedle
Needleman-Wunsch and Smith-Waterman algorithms in python
gorliver/networkx
Official NetworkX source code repository.
gorliver/pyCoverage
parallel version of coverageBed from bedtools
gorliver/pylcs
super fast cpp implementation of longest common subsequence/substring
gorliver/quota-alignment
Guided synteny alignment between duplicated genomes (within specified quota constraint)
gorliver/shortcutKeys
gorliver/tmux.conf
current tmux setting
gorliver/TULIP
TULIP - The Uncorrected Long read Itegration Pipeline
gorliver/vim-python-ide
Python development config with asynchronous Vim Plugins
gorliver/vr-codebase
The overall codebase developed and used by the Vertebrate Resequencing group at the Sanger Institute