Collection of command line cheat sheets formatted for navi: An interactive cheatsheet tool for the command-line
To import these into navi use:
navi repo add https://github.com/gpappasunb/cheats
To check where it was installed in your computer:
navi info cheats-path
You have to search navi sheets using the following queries:
navi -q bioinfo
navi --query bioinfo
navi -q blast
navi -q fasta
navi --query gff
This is a partial list of the available cheats given the bioinformatics program categories:
- Execute blast against a database of choice
Requirements: SeqKit - Ultrafast FASTA/Q kit
- Fasta from a subset of ids
- Subset a fasta by IDs in a file
- Fasta subsequence from range
- Subset a fasta by IDs using a regex
- Subset a fasta by a GFF file
- Get the sequence ids
- Get the sequence full titles
- Count the number of sequences
- Index a fasta file
- Full path of fasta file
- filter GFF by gene feature type
- filter GFF by selected feature types
- filter GFF by selected feature types
- Get the list of a specific attribute in GFF (9th column)
- GFF to BED