gputzel

amplicon_snakemake

Snakemake-based workflow for (post-OTU-clustering) analysis of amplicon sequencing data

decode

Implementation in Python of the cryptogram decoder described in Persi Diaconis' "The Markov Chain Monte Carlo Revolution"

eulercode

find_amplicons

Snakemake workflow to find 16S amplicons in bacterial genomes

FungalReads

Snakemake-based workflow: search for reads of fungal origin in host RNAseq data

ggp.utils

Various useful R functions

gputzel.github.io

Greg Putzel's personal website

jsDecode

JavaScript demonstration of cryptogram decoder using Markov Chain Monte Carlo

metasynth

Snakemake-based workflow for generating synthetic shotgun metagenomics data

gputzel/find_amplicons

Snakemake workflow to find 16S amplicons in bacterial genomes

gputzel/amplicon_snakemake

Snakemake-based workflow for (post-OTU-clustering) analysis of amplicon sequencing data

gputzel/decode

Implementation in Python of the cryptogram decoder described in Persi Diaconis' "The Markov Chain Monte Carlo Revolution"

gputzel/eulercode

gputzel/FungalReads

Snakemake-based workflow: search for reads of fungal origin in host RNAseq data

gputzel/ggp.utils

Various useful R functions

gputzel/gputzel.github.io

Greg Putzel's personal website

gputzel/jsDecode

JavaScript demonstration of cryptogram decoder using Markov Chain Monte Carlo

gputzel/metasynth

Snakemake-based workflow for generating synthetic shotgun metagenomics data

gputzel/pubshare-to-qiime2

Scripts for getting FASTQ files from Pubshare and running them through Qiime2

gputzel/pyscore

Python scripts and Snakemake workflow for freezing rate analysis (behavioral scoring).

gputzel/rnaseq_snakemake

Snakemake-based workflow for RNAseq analysis using DESeq2

gputzel/scrnaseq

Snakemake-based workflow for scRNAseq analysis using Seurat

gputzel/UCS

Functions related to the union-closed subset problem