This is all the things you need and probably more for the UNC fMRI_bootcamp2019. Please keep in mind this is usually at minimum a 1 week course. It is an entire PhD for others. We are going to fly fast and loose but at the end you should have a general idea why preprocessing steps are taken and how to create GLMs.
This is going to allow us to all be working off the same slides and operating systems. https://docs.docker.com/docker-for-mac/
https://www.realvnc.com/en/connect/download/viewer/
docker pull gshearrer/fmribootcamp:0.05
This is gonna take a minute. While you are waiting brush up on linux! http://www.ee.surrey.ac.uk/Teaching/Unix/
open -a XQuartz
IP=$(ifconfig en1 | grep inet | awk '$1=="inet" {print $2}')
xhost + $IP
docker run --rm -it -p 5901:5901 gshearrer/fmribootcamp:0.05 xterm
Open your vnc viewer and type 127.0.0.1:5901 It will ask you for a password: graceiscool You should have a plain grey desktop. If you click the desktop a terminal window will appear. Test the install by typing the following the in VNC terminal (not your local terminal)
fsl &
You should now have the fsl GUI on the desktop. If that is working you are all good! If not..... contact me. If that is all good (or if it isn't but you want to stop) type exit in the vnc terminal
docker run --rm -it -p 8888:8888 -p 5901:5901 -v /Users/gracer/Google\ Drive/fMRI_workshop/2019/4dock/notebooks/:/home/jovyan/work gshearrer/fmribootcamp:0.05 xterm
docker ps -a
docker exec -it a995c3ff00ca bash
jupyter notebook --allow-root
Please visit the documentation site for help using and contributing to this image and others.
https://github.com/kaczmarj/neurodocker
ds001966-1.0.1