/probabilistic-blast

A Python implementation of a probabilistic BLAST algorithm.

Primary LanguagePythonMIT LicenseMIT

Description

A Python implementation of a probabilistic BLAST algorithm that builds off of JiaShun-Xiao/BLAST-bioinfor-tool

Authors

Project by Grace Hu & Xingyu Chen

How to Use

  1. Install requirements from requirements.txt
  2. Run generate_index.py to generate Pandas dataframe (saved in .csv file) containing the index used in BLAST
  3. There are test methods available in Test.py to run