gradonion

gradonion's Stars

• aselewa/dropseqRunner

  Lightweight pipeline for processing droplet-based single-cell RNA-seq data

  Language:Python17356

• xinhe-lab/GSFA

  R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening data.

  Language:C++17361

• gradonion/ATACseq_pipeline

  A Snakemake pipeline for processing ATAC-seq reads from various samples into a peak count matrix

  Language:Python4100

• gradonion/BVS_cre-gene

  A Bayesian variable selection method that models the relationship between the activity of cis-regulatory elements and target gene expression

  Language:R1100

• gradonion/CROP-seq

  Differential expression analysis on single-cell CROP-seq data (neural progenitor cells)

  Language:HTML1100

• gradonion/GSFA_site

  Guided Sparse Factor Analysis (GSFA) on perturbed single-cell RNA-seq data: https://gradonion.github.io/GSFA_site/

  Language:R1200