gratus907/hisim

Finding Highly Similar Regions of Genomic Sequences through Homomorphic Encryption

Finding Highly Similar Regions of Genomic Sequences through Homomorphic Encryption

Bitwise implementation using TFHE scheme

Stored in bitwise directory

Requirement

TFHE
OpenMP

Build

make

Run

./main <file_X> <file_Y> <|X|> <|R|> <w_int>

Sample run

./main ../dataset/paper_x.dat ../dataset/paper_y.dat 5 27 9

Wordwise implementation using HEAAN scheme

Stored in wordwise directory

Requirement

HEaan.STAT (license required)

Build

cmake ./
make

Run

./main <file_X> <file_Y> <|X|> <|R|> <l> <q> <d>

Sample run

./main ../dataset/paper_x.dat ../dataset/paper_y.dat 5 27 50 29 11