Pinned Repositories
16s-int-bt
16S Intermediate Bioinformatics training manuals
16S-rDNA-dada2-pipeline
TADA - Targeted Amplicon Diversity Analysis - a DADA2-focused Nextflow workflow for any targeted amplicon region
16SrRNA-hex-tutorial
16S rRNA marker gene upstream and dowstream analysis tutorial for the UCT Hex cluster.
batch-system-comp
Scripts showing some comparison between SLURM and PBS/TORQUE submissions
crypt4gh-tutorial
A tutorial on using Crypt4GH
HUPAN
Human pan-genome analysis pipeline
varcall
Nextflow scripts for doing variant calling on human samples
grbot's Repositories
grbot/16SrDNA
Repository containing the CBIO H3ABioNet 16S rDNA diversity analysis node assessment code and documentation
grbot/amw
16S analysis tutorial - part of Analysing the Microbiome Workshop 2017. We ran this on the Wits cluster.
grbot/azure-cbio
Setup for all Azure related CBIO work
grbot/nextflow-hack17-tutorial
Tutorial from Nextflow course
grbot/Numeric-Curation-Tool
Curation tool for Numeric.org mapping from Khan Academy videos to the South African syllibus.
grbot/Numeric-Web-API
pseudo-RESTish API mostly for use by the curation tool (or curriculum tool)... Uses SLIM library (PHP) to collect data from the URLs, and reroute to php page with appropriate protocol.
grbot/shiny_friday
SatRday's Shiny Friday session
grbot/tc9
grbot/template-nf
Empty template for nextflow pipelines