greenelab/annotation-refinery

Issues

• "download_files" not exist

  #11 opened 7 years ago by dongbohu
  0

• Create a requirements.txt file with all the dependencies

  #3 opened 7 years ago by rzelayafavila
  1

• urllib.urlretrieve() fails on second ftp transfer

  #7 opened 7 years ago by rzelayafavila
  2

• README.rst: Typos

  #9 opened 7 years ago by dongbohu
  1

• Move common urls among species "*.ini" files to "main_config.ini" file so that we only have to change it in one place if we need to.

  #10 opened 7 years ago by rzelayafavila
  0

• Annotation refinery creating more versions in Tribe when it looks like list of genes in the geneset is unchanged.

  #5 opened 7 years ago by rzelayafavila
  0

• Annotation refinery is taking too long to load all of the GO, KEGG and DO sets to Tribe.

  #6 opened 7 years ago by rzelayafavila
  0

• Abstract code that builds file paths from urls into a function, using os.path. and urlsplit

  #2 opened 7 years ago by rzelayafavila
  0

• Abstract code in download_files.py file to be able to interact with each service (GO, DO, KEGG) independently.

  #1 opened 7 years ago by rzelayafavila
  0