gregmcinnes

gregmcinnes's Stars

• acrinklaw/RustMelt5

  Rust port of MELTING 5

  Language:Rust2

• ml4bio/RNA-FM

  RNA foundation model

  Language:Jupyter Notebook20322

• PharmGKB/PGxPOP

  PGxPOP

  Language:Python163

• WansonChoi/CookHLA

  An accurate and efficient HLA imputation method.

  Language:Python269

• EBjerrum/SMILES-enumeration

  SMILES enumeration for QSAR modelling using LSTM recurrent neural networks

  Language:Python21971

• sacdallago/bio_embeddings

  Get protein embeddings from protein sequences

  Language:HTML46365

• X-rayLaser/keras-cnn-1drnn-ctc

  A toolkit for training CNN-1DRNN-CTC model to perform line-level Handwritten Text Recognition

  Language:Python91

• songlab-cal/tape

  Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.

  Language:Python662129

• konradjk/loftee

  Language:Perl17455

• kundajelab/DeepExplain

  A unified framework of perturbation and gradient-based attribution methods for Deep Neural Networks interpretability

  Language:Python87

• rivas-lab/public-resources

  Repository for resources we'd like to share with the community.

  Language:Jupyter Notebook2411

• stephenturner/oneliners

  Useful bash one-liners for bioinformatics.

  1.9k520

• h2oai/h2o-3

  H2O is an Open Source, Distributed, Fast & Scalable Machine Learning Platform: Deep Learning, Gradient Boosting (GBM) & XGBoost, Random Forest, Generalized Linear Modeling (GLM with Elastic Net), K-Means, PCA, Generalized Additive Models (GAM), RuleFit, Support Vector Machine (SVM), Stacked Ensembles, Automatic Machine Learning (AutoML), etc.

  Language:Jupyter Notebook6.9k2k

• Illumina/pyflow

  A lightweight parallel task engine

  Language:Python14644

• verilylifesciences/variant-qc

  Quality control methods for human genomic variants.

  Language:Jupyter Notebook6229