Pinned Repositories
amp_reseq
Backup of amplicon resequencing data processing scripts for use with QIIME
aspp-apac-paper
demonstration repo for ASPP-APAC 2019
code-for-the-world
A tutorial for Advanced Scientific Python Programming on organizing, documenting, and distributing code
deformity-power-analysis
Code and data for power analysis in Gagliardi et al. 2019
des_sel_data
Some data from the Drosophila desiccation selection experiment described in Griffin et al. 2016 (DOI: 10.1534/genetics.116.187104)
desiccation-selection
desiccation selection experiment R scripts
GWAS_pipeline
Pipelines in progress for GWAS analysis
healthhack
melb_sc_bootcamp
Software Carpentry Bootcamp repository
metabarcodedb
R package for making a metabarcoding reference database
griffinp's Repositories
griffinp/GWAS_pipeline
Pipelines in progress for GWAS analysis
griffinp/metabarcodedb
R package for making a metabarcoding reference database
griffinp/amp_reseq
Backup of amplicon resequencing data processing scripts for use with QIIME
griffinp/aspp-apac-paper
demonstration repo for ASPP-APAC 2019
griffinp/code-for-the-world
A tutorial for Advanced Scientific Python Programming on organizing, documenting, and distributing code
griffinp/deformity-power-analysis
Code and data for power analysis in Gagliardi et al. 2019
griffinp/des_sel_data
Some data from the Drosophila desiccation selection experiment described in Griffin et al. 2016 (DOI: 10.1534/genetics.116.187104)
griffinp/desiccation-selection
desiccation selection experiment R scripts
griffinp/healthhack
griffinp/melb_sc_bootcamp
Software Carpentry Bootcamp repository
griffinp/metabarcoding_workflow
R scripts for metabarcoding analysis for invertebrate COI amplicon data
griffinp/polarbear
Material for Polar Bear population genomics tutorial
griffinp/qiime
Quantitative Insights Into Microbial Ecology (QIIME): Official repository for software and unit tests
griffinp/r-novice-owls
Novice R materials for Software Carpentry Workshops
griffinp/r-string-calc
R string calculation for Git workshop
griffinp/R_code_plotting_trees
Some R code for plotting phylogenetic trees
griffinp/rubra
Infrastructure code to support DNA pipeline
griffinp/Sel_Line
Bioinformatics pipeline files for processing selected line sequences
griffinp/variant_calling_pipeline
A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL.
griffinp/vcf-venn
A tool to compare variants contained within multiple vcf format files, to determine common and unique variants to each file. To write these variants to a new file also in vcf format.