groupschoof

INRES Crop Bioinformatics, University of BonnKatzenburgweg 2, 53115 Bonn, Germany

Pinned Repositories

A2TEA.WebApp
R Shiny web application for the inspection, filtering & analysis of results generated by the A2TEA pipeline
Language:R00
A2TEA.Workflow
Automated Assessment of Trait-specific Evolutionary Adaptations
Language:Python00
AHRD
High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.
Language:Java63 7 1720
AHRD_on_gene_clusters
Automated Assignment of Human Readable Descriptions on Gene Clusters generated by OrthoMCL
Language:R11
AHRD_Snakemake
Snakemake wrapper for AHRD
Language:Python21
generate_domain_weights
Lee, Byungwook, and Doheon Lee developed a similarity measure for protein domain architectures. This is based on precomputed ‘domain weights’. The ‘generate_domain_weights’ tool computes these domain weights for all InterPro annotations in UniprotKB in parallel using R and redis. [Reference in README.textile]
Language:R10
MuWU
Mu-seq Workflow Utility
Language:Python00
PhyloFun
Function prediction of uncharacterized proteins using their evolutionary history.
Language:R21

groupschoof/AHRD
High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.
Language:Java63 7 1720
groupschoof/AHRD_Snakemake
Snakemake wrapper for AHRD
Language:Python21
groupschoof/PhyloFun
Function prediction of uncharacterized proteins using their evolutionary history.
Language:R21
groupschoof/AHRD_on_gene_clusters
Automated Assignment of Human Readable Descriptions on Gene Clusters generated by OrthoMCL
Language:R11
groupschoof/generate_domain_weights
Lee, Byungwook, and Doheon Lee developed a similarity measure for protein domain architectures. This is based on precomputed ‘domain weights’. The ‘generate_domain_weights’ tool computes these domain weights for all InterPro annotations in UniprotKB in parallel using R and redis. [Reference in README.textile]
Language:R10
groupschoof/A2TEA.WebApp
R Shiny web application for the inspection, filtering & analysis of results generated by the A2TEA pipeline
Language:R00
groupschoof/A2TEA.Workflow
Automated Assessment of Trait-specific Evolutionary Adaptations
Language:Python00
groupschoof/MuWU
Mu-seq Workflow Utility
Language:Python00