Bork Group at EMBL Heidelberg

Germany

Pinned Repositories

ENA2eggNOG
eggNOG mapper pipeline
Language:Nextflow1 2 00
enterotypes
Language:R5 2 11
fmt_metastudy
Analysis code for "Drivers and Determinants of Strain Dynamics Following Fecal Microbiota Transplantation" by Schmidt, Li et al
Language:R2 3 01
gunc
Python package for detection of chimerism and contamination in prokaryotic genomes.
Language:Python68 5 398
gunc_workflow
GUNC pipeline
Language:Nextflow1 2 00
microbial_load_predictor
R package to predict microbial loads
Language:R11 3 20
nHUMAnN
Language:Nextflow1 3 01
spire
Pipeline used to generate data on spire.embl.de
Language:Nextflow5 2 02
spire_contribute
3 4 150
vpthemall
Language:HTML1 2 00

Bork Group at EMBL Heidelberg's Repositories

grp-bork/gunc
Python package for detection of chimerism and contamination in prokaryotic genomes.
Language:Python68 5 398
grp-bork/microbial_load_predictor
R package to predict microbial loads
Language:R11 3 20
grp-bork/enterotypes
Language:R5 2 11
grp-bork/spire
Pipeline used to generate data on spire.embl.de
Language:Nextflow5 2 02
grp-bork/CellCount_Nishijima_2024
R codes used to construct prediction models and prepare figures
Language:HTML3 3 0
grp-bork/spire_contribute
3 4 150
grp-bork/fmt_metastudy
Analysis code for "Drivers and Determinants of Strain Dynamics Following Fecal Microbiota Transplantation" by Schmidt, Li et al
Language:R2 3 01
grp-bork/cdifficile_Ferretti_2022
Meta-analysis of over 42k metagenomic samples to investigate Clostridioides difficile prevalence across age, geography, health and disease
Language:R1 0 00
grp-bork/ENA2eggNOG
eggNOG mapper pipeline
Language:Nextflow1 2 00
grp-bork/formHTR
Handprint text recognition in form documents.
Language:Python1 1 461
grp-bork/gunc_workflow
GUNC pipeline
Language:Nextflow1 2 00
grp-bork/multiomics_Wuyts_2022
Language:R10
grp-bork/nHUMAnN
Language:Nextflow1 3 01
grp-bork/vpthemall
Language:HTML1 2 00
grp-bork/drugbug_Santamarina_2023
Language:R0 2 00
grp-bork/ena-mirror
Mirror selected ENA data locally
Language:Python0 1 00
grp-bork/gff_quantifier
Language:Python0 0 00
grp-bork/metadrugs_figures
Language:HTML0 2 00
grp-bork/meta_eukaryome_detect
Language:Python
grp-bork/metaTREC-curation
1 15
grp-bork/MultiPath
Language:Nextflow3 01
grp-bork/nevermore_profiler
Language:Nextflow1
grp-bork/nIMP3
Language:Nextflow3 01
grp-bork/reCOGnise
Language:Python3 0
grp-bork/samestr_flow
Language:Nextflow3 0