Pinned Repositories
150826_pathway_analysis
2013-davis-assembly
2014-megahit-evaluation
2014-molgula-genome-assemblies
2015-may-nonmodel
Workshop materials for dib-training.readthedocs.org/en/pub/2015-05-04-mRNAseq-nonmodel.html
2015-shell-genomics
Lesson for the shell for genomics
2016-adv-begin-shell-genomics
Workshop content for http://dib-training.readthedocs.org/en/pub/2016-01-13-adv-beg-shell.html
2016-aug-nonmodel-rnaseq
2016-mar-nonmodel
gsc0107's Repositories
gsc0107/API
Repository for version control of the BrAPI specifications
gsc0107/Apollo
Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.
gsc0107/Basecalling-comparison
A comparison of different Oxford Nanopore basecallers
gsc0107/bioinformatics-ca.github.io
repository for student workshop pages
gsc0107/biolib
Python package for common tasks in bioinformatic.
gsc0107/biom-format
The Biological Observation Matrix (BIOM) Format Project
gsc0107/BLAST-comparison
BLAST comparison with faster programs, like BLAST, BLAST fast, Diamond, Usearch (local and ublast), Mmseq2.
gsc0107/book-notes
Notes from books and other interesting things that I've read.
gsc0107/Books
Collection of Programming, Databases, Linux & Tools Books
gsc0107/canu
A single molecule sequence assembler for genomes large and small.
gsc0107/Chiron
A basecaller for Oxford Nanopore Technologies' sequencers
gsc0107/CompareM
A toolbox for comparative genomics.
gsc0107/d3
Bring data to life with SVG, Canvas and HTML. :bar_chart::chart_with_upwards_trend::tada:
gsc0107/docs
Documentation for setting up OpenAPS
gsc0107/docs-1
Crafter CMS documentation
gsc0107/expvip-web
expVIP. EXPression and VIsualisation Platform
gsc0107/FAC-assembly
Scripts for assembly of PE Illumina from pooled BAC/FACs
gsc0107/galaxy
Data intensive science for everyone.
gsc0107/gatk-1
Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk repository
gsc0107/go-github
Go library for accessing the GitHub API
gsc0107/GroopM
Metagenomic binning suite
gsc0107/jsandbox
My java Sandbox
gsc0107/jvarkit
Java utilities for Bioinformatics
gsc0107/kevlar
Reference-free variant discovery in large eukaryotic genomes
gsc0107/line_profiler
Line-by-line profiling for Python
gsc0107/NanoSim
Nanopore sequence read simulator
gsc0107/octopus
Bayesian haplotype-based mutation calling
gsc0107/Porechop
adapter trimmer for Oxford Nanopore reads
gsc0107/readthedocs.org
The source code that powers readthedocs.org
gsc0107/VirFinder
VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data