Pinned Repositories
bio
bioconda-recipes
Conda recipes for the bioconda channel.
Damage-estimator
samcut
samcut is cut for sam. Get the cigar and MD columns easily: `samtools view in.bam | samcut cigar MD`.
gshiba's Repositories
gshiba/samcut
samcut is cut for sam. Get the cigar and MD columns easily: `samtools view in.bam | samcut cigar MD`.
gshiba/bio
gshiba/bioconda-recipes
Conda recipes for the bioconda channel.
gshiba/Damage-estimator
gshiba/echo_kernel
A simple example kernel for Jupyter
gshiba/fastai
The fastai deep learning library, plus lessons and tutorials
gshiba/gshiba.github.io
gshiba/jupyter-notebook-extension
gshiba/jupyter_contrib_nbextensions
A collection of various notebook extensions for Jupyter
gshiba/kuku81
gshiba/more-itertools
More routines for operating on iterables, beyond itertools
gshiba/ogel
gshiba/pandas
Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
gshiba/papermill
📚 Parameterize, execute, and analyze notebooks
gshiba/pybedtools
Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)
gshiba/pysam
Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.
gshiba/pytest-mpl
A pytest plugin to faciliate image comparison for Matplotlib figures
gshiba/qmk_firmware
Open-source keyboard firmware for Atmel AVR and Arm USB families
gshiba/qPython
interprocess communication between Python and kdb+
gshiba/rustlings
:crab: Small exercises to get you used to reading and writing Rust code!
gshiba/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
gshiba/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
gshiba/strata-mpl-tutorial
gshiba/typeshed
Collection of library stubs for Python, with static types
gshiba/UMI-tools
Tools for handling Unique Molecular Identifiers in NGS data sets
gshiba/vim-colorschemes
one colorscheme pack to rule them all!
gshiba/vim-indent-rainbow
gshiba/vim-valign
gshiba/vizz
gshiba/youtube
youtube files for videos