Pinned Repositories
alternatives
Detection of alternatives by local assembly of short reads
bambamc
lightweight C implementation of name collating BAM file input and BAM file output
biobambam
Tools for bam file processing
biobambam2
Tools for early stage alignment file processing
bwtb3m
Burrows Wheeler Transform By Balanced Block Merging
daccord
d'accord is a non hybrid long read consensus program based on local de Bruijn graph assembly
lastools
Tools for processing DALIGNER .las files
libmaus
libmaus
libmaus2
collection of data structures and algorithms
LiftingWaveletTransform
implementations of lifting scheme based wavelet transforms in C++
gt1's Repositories
gt1/biobambam2
Tools for early stage alignment file processing
gt1/biobambam
Tools for bam file processing
gt1/daccord
d'accord is a non hybrid long read consensus program based on local de Bruijn graph assembly
gt1/libmaus2
collection of data structures and algorithms
gt1/bambamc
lightweight C implementation of name collating BAM file input and BAM file output
gt1/lastools
Tools for processing DALIGNER .las files
gt1/bwtb3m
Burrows Wheeler Transform By Balanced Block Merging
gt1/alternatives
Detection of alternatives by local assembly of short reads
gt1/damapper_bwt
damapper plus BWT based seed searching
gt1/loresim2
gt1/alignalt
Program aligning contigs to reference regions for detecting matching stretches
gt1/bwa
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences
gt1/canu
A single molecule sequence assembler for genomes large and small.
gt1/compile_damapper
Compilation and wrapper scripts for running damapper
gt1/DALIGNER
Find all significant local alignments between reads
gt1/DAMAPPER
long read to reference mapping tool
gt1/DASCRUBBER
Alignment-based Scrubbing pipeline
gt1/DAZZ_DB
The Dazzler Data Base
gt1/FIT
FIT
gt1/hpcsched
HPC job dependency scheduler
gt1/io_lib
Staden Package "io_lib" (sometimes referred to as libstaden-read by distributions). This contains code for reading and writing a variety of Bioinformatics / DNA Sequence formats.
gt1/loresim
Long read simulation
gt1/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
gt1/prs
Parallel radix sorting
gt1/REAL
REAL: an efficient REad ALigner for next-generation sequencing reads
gt1/tensorflow
Computation using data flow graphs for scalable machine learning
gt1/translocations
Tools for translocation analysis
gt1/VGPirp
Reader/writer for the VGP irp file format
gt1/VGPirpbin
VGP IRP ascii <-> binary converters
gt1/yalora
Yet another long read aligner