Pinned Repositories
Alignment_Tools
bootSNaQ-MA
Wrapper script for bootstrapping with SNaQ when there are multiple alleles per species
Botany2023-Networks
Website for organizing "Methodological Advances in Reticulate Evolution" workshop at the Botany 2023 conference
bpp_PosteriorPlots
Visually pleasing figures for evaluating convergence from BPP MCMC analyses
bpp_simulationTools
diamond-identifiability
EvolutionaryGenomics
Class on genomics and evolutionary applications
gtiley.github.io
Personal Research Website
Ks_plots
R functions for Ks plot analyses with mixture models
Phasing
Pipeline for phasing sequence data in polyploids. Designed for target enrichment data, but probably works with other data too.
gtiley's Repositories
gtiley/Phasing
Pipeline for phasing sequence data in polyploids. Designed for target enrichment data, but probably works with other data too.
gtiley/Ks_plots
R functions for Ks plot analyses with mixture models
gtiley/diamond-identifiability
gtiley/Botany2023-Networks
Website for organizing "Methodological Advances in Reticulate Evolution" workshop at the Botany 2023 conference
gtiley/EvolutionaryGenomics
Class on genomics and evolutionary applications
gtiley/fasta-conversion
command-line tools for converting fasta files with population samples into other data formats
gtiley/gtiley.github.io
Personal Research Website
gtiley/Alignment_Tools
gtiley/bootSNaQ-MA
Wrapper script for bootstrapping with SNaQ when there are multiple alleles per species
gtiley/bpp_PosteriorPlots
Visually pleasing figures for evaluating convergence from BPP MCMC analyses
gtiley/bpp_simulationTools
gtiley/DBEV-Phylogenomics
Phylogenomics workshop at DBEV, University of Antananarivo
gtiley/KLpps
Posterior predictive simulation for genes trees with KL divergence as a summary statistic
gtiley/estploidy
Python package for ploidy estimation and data exploration from a VCF
gtiley/HybSeq-Cleaning
Scripts for reducing downstream model violations in target-enrichment data
gtiley/Locus-Splitter
gtiley/misc
gtiley/RBG-Networks
gtiley/ResearchSupplements
Supplemental scripts and analyses for various papers can be found in here