/Osirix_annotation

Contains script to reconstruct ground truth annotations from csv import of annotations from Osirix

Primary LanguageJupyter Notebook

usage: for calcium scoring :

xl_to_anno(csv_file,dcm_file,dest_file,mode=True)

for others

xl_to_anno(csv_file,dcm_file,dest_file,mode=False)

where csv_file is that path of the csv file exported from Osirix, dcm_file is the path of the dicom file to be annotated dest_file is the path where we want to save all the ground truths