gtrichard
Phylogenetics, Phylodynamics, Epigenomics, Hi-C, and transcriptomics data integration and tools development
ANSES Swine Immunology Virology UnitPloufragan, France
Pinned Repositories
HiCExplorer
HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
another_set_of_rscripts_for_genomics
beast_tools
BEAST Tools - various scripts to help with BEAST Phylodynamic Analyses
bioconda-recipes
Conda recipes for the bioconda channel.
deepStats
deepStats: a stastitical toolbox for deeptools and genomic signals
deepTools
Tools to process and analyze deep sequencing data.
HiCExplorer
HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
influenza_sequences_toolbox
A set of scripts and bioinformatic tools to process, handle and analyse Influenza viruses sequences
mummer-ggplot
Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.
HiCAssembler
Software to assemble contigs/scaffolds into chromosomes using Hi-C data
gtrichard's Repositories
gtrichard/deepStats
deepStats: a stastitical toolbox for deeptools and genomic signals
gtrichard/mummer-ggplot
Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.
gtrichard/HiCExplorer
HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
gtrichard/influenza_sequences_toolbox
A set of scripts and bioinformatic tools to process, handle and analyse Influenza viruses sequences
gtrichard/another_set_of_rscripts_for_genomics
gtrichard/beast_tools
BEAST Tools - various scripts to help with BEAST Phylodynamic Analyses
gtrichard/bioconda-recipes
Conda recipes for the bioconda channel.
gtrichard/deepTools
Tools to process and analyze deep sequencing data.
gtrichard/Galaxy-wrapper-for-ggplot2-scatterplot
gtrichard/HiCBrowser
Simple web browser to visualize HiC tracks
gtrichard/HiCMatrix
gtrichard/InversionsFinder
Snakemake-based pipeline to align multiple genomes and find large inversions.
gtrichard/mcclintock
Meta-pipeline to identify transposable element insertions using next generation sequencing data
gtrichard/pigie-2012-2022
Nextstrain Instance for the PIGIE European Swine Influenza A Virus Surveillance Compilation from 2012 to 2022
gtrichard/snakepipes
Customizable workflows based on snakemake and python for the analysis of NGS data
gtrichard/STIRRER
STIRRER Project Code Repository
gtrichard/swIAV-H1av-France-2019-2022
H1av swIAV Evolution from 2019 to 2022
gtrichard/tools-iuc
Tool Shed repositories maintained by the Intergalactic Utilities Commission
gtrichard/UpSetR
An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..
gtrichard/uvip
UVIP pipelines and scripts