gtsambos
Postdoc in Kelley's Harris lab at the University of Washington (Genome Sciences).
University of WashingtonWA, USA
Pinned Repositories
2019-07-SMBE
A repo holding my poster displayed at SMBE2019, with some extra information.
2022-ts-workshops
Notebooks for tree sequence workshops in 2022.
tskit
The tree sequence toolkit
tspop
gtsambos's Repositories
gtsambos/2022-ts-workshops
Notebooks for tree sequence workshops in 2022.
gtsambos/2019-07-SMBE
A repo holding my poster displayed at SMBE2019, with some extra information.
gtsambos/tskit
The tree sequence toolkit
gtsambos/tspop
gtsambos/2019-11-GeneMappers
Holds poster and slides for my GeneMappers 2019 presentation.
gtsambos/2021-04-ProbGen
Holds poster for ProbGen2021 meet.
gtsambos/2021-05-3MT
My 3MT slide.
gtsambos/abcrf
:exclamation: This is a read-only mirror of the CRAN R package repository. abcrf — Approximate Bayesian Computation via Random Forests
gtsambos/binning-stuff
how to bin with tidyverse
gtsambos/bio-glossary
My every-growing biology glossary, and a simple script that adds to it.
gtsambos/colab_wiki
gtsambos/GLIMPSE
holds my modifications to the GLIMPSE software to make it runnable on our SGE cluster.
gtsambos/jay-ped-edits
edits to Daniel's MutationCaller script
gtsambos/jupyter
Contains various Jupyter notebooks.
gtsambos/MastersProject
gtsambos/msprime
A reimplementation of Hudson's classical ms simulator for modern data sets.
gtsambos/msprime-1.0-paper
Publication describing msprime 1.0
gtsambos/ooa-ancestry-example
gtsambos/progen-2023
tskit poster for probgen 2023
gtsambos/proj-mutator-mapping
Code for reproducing analysis and figures from https://elifesciences.org/reviewed-preprints/89096
gtsambos/pyslim
Tools for dealing with tree sequences coming to and from SLiM.
gtsambos/resume
My resume.
gtsambos/slime
A package for simulating tree sequences with local ancestry information.
gtsambos/SMBE-SGE-2019
Material for SMBE-SGE-2019 workshop
gtsambos/stdpopsim
A library of standard simulation models for msprime
gtsambos/test-repo
gtsambos/tsconvert
Utilities for converting tree sequences to and from other formats
gtsambos/tsinfer
Infer a tree sequence from genetic variation data.
gtsambos/tutorials
A set of tutorials for msprime and tskit.
gtsambos/workshops
A collection of workshop material