Pinned Repositories
bamstats
A command line tool to compute mapping statistics from a BAM file
biogenome-portal
Biogenome data portal
chip-nf
An automated ChIP-seq pipeline using Nextfow
FA-nf
Functional annotation pipeline for proteins from non-model organisms implemented in Nextflow
geneid
Predict genic elements as splice sites, exons or genes, along eukaryotic DNA sequences
geneidx
Nextflow pipeline for genome annotation of protein-coding genes
ggsashimi
Command-line tool for the visualization of splicing events across multiple samples
grape-nf
An automated RNA-seq pipeline using Nextflow
LyRic
Long RNA-seq analysis workflow
sqtlseeker2-nf
An automated sQTL mapping pipeline using Nextflow
Guigo Lab's Repositories
guigolab/ggsashimi
Command-line tool for the visualization of splicing events across multiple samples
guigolab/grape-nf
An automated RNA-seq pipeline using Nextflow
guigolab/geneid
Predict genic elements as splice sites, exons or genes, along eukaryotic DNA sequences
guigolab/geneidx
Nextflow pipeline for genome annotation of protein-coding genes
guigolab/LyRic
Long RNA-seq analysis workflow
guigolab/tmerge
Merge transcriptome read-to-genome alignments into non-redundant transcript models
guigolab/sQTLseekeR2
R package to detect splicing QTLs (sQTLs)
guigolab/biogenome-portal
Biogenome data portal
guigolab/sqtlseeker2-nf
An automated sQTL mapping pipeline using Nextflow
guigolab/jbrowse-plugin-refget-api
A JBrowse 2 plugin to access servers implementing the refget API of GA4GH
guigolab/gencode-cls-master-table
Results of the GENCODE pipeline to produce a collection of full length high quality transcripts
guigolab/CLS3_GENCODE
Charting thousands of novel gene loci in the human and mouse genomes through targeted full-length long-read RNA sequencing
guigolab/EPIraction
guigolab/beacon-v2
Unified repository for the GA4GH Beacon v2 API standard
guigolab/bioproject-genome-tracker
Retrieve all the INSDC public assemblies under a BioProject umbrella
guigolab/cls3-final-files-description
guigolab/file-stream-server
A little flask API to stream download files given a folder path
guigolab/geneid-param-resolver
Given a taxID returns the closest parameter file contained in the repository: https://github.com/guigolab/geneid-parameter-files
guigolab/geneid-parameter-files
Repo with all the geneid parameter files
guigolab/genome-annotation-tracker
Tracks Eukaryotic genome annotations (gff) from NCBI and Ensembl
guigolab/gff2ps
A program for visualizing annotations of genomic sequences
guigolab/git-tech-session
Lab tech session on Git, GiHub and GitHub Actions
guigolab/hugo-future-imperfect-slim
Multilingual Blogging Theme for Hugo | Check the Wiki for Documentation
guigolab/rnaget-beacon-demo
Demo of the RNAget extension for BeaconV2
guigolab/rnaget-client
Demo client for the GA4GH rnaget API
guigolab/rnaget-py-client
A python client to query the RNAget compliant servers
guigolab/rnaget-r-client
A R package to query the RNAget compliant servers
guigolab/rnaseq-course
Data for the RNAseq course at CRG
guigolab/selenoprofiles-nf
selenoprofiles4 nextflow pipeline
guigolab/spack
A flexible package manager that supports multiple versions, configurations, platforms, and compilers.