Pinned Repositories
colab-r-libs
A test to see how I could save installation time for R libs each time I start a Colab notebook
colab-r-libs-gviz
R libraries installed in Colab to use Gviz
DEA.R
Script to automate differential expression analysis using DESeq2, edgeR or limma-voom
Epromoters
Genome-wide characterization of mammalian promoters with distal enhancer functions
gc-conda-recipes
Conda recipes for tools not fitting conda-forge or bioconda
ggrastr
Raster geoms for ggplot2
greatr
A command-line tool and R package to automate multiple samples queries to GREAT and produce useful and nice-looking summary plots
igv-webapp
IGV Web App
mw-belhocine2021
Metaworkflow module for the analyses done for the article "Dynamic of broad H3K4me3 domains uncover an epigenetic switch between cell identity and cancer-related genes"
mw-lib
Metaworkflow library of generalised Snakemake rules
guillaumecharbonnier's Repositories
guillaumecharbonnier/greatr
A command-line tool and R package to automate multiple samples queries to GREAT and produce useful and nice-looking summary plots
guillaumecharbonnier/mw-belhocine2021
Metaworkflow module for the analyses done for the article "Dynamic of broad H3K4me3 domains uncover an epigenetic switch between cell identity and cancer-related genes"
guillaumecharbonnier/colab-r-libs
A test to see how I could save installation time for R libs each time I start a Colab notebook
guillaumecharbonnier/colab-r-libs-gviz
R libraries installed in Colab to use Gviz
guillaumecharbonnier/DEA.R
Script to automate differential expression analysis using DESeq2, edgeR or limma-voom
guillaumecharbonnier/Epromoters
Genome-wide characterization of mammalian promoters with distal enhancer functions
guillaumecharbonnier/gc-conda-recipes
Conda recipes for tools not fitting conda-forge or bioconda
guillaumecharbonnier/ggrastr
Raster geoms for ggplot2
guillaumecharbonnier/igv-webapp
IGV Web App
guillaumecharbonnier/knitr
A general-purpose tool for dynamic report generation in R
guillaumecharbonnier/mw-lib
Metaworkflow library of generalised Snakemake rules
guillaumecharbonnier/mw-cieslak2019
MetaWorkflow module for the bioinformatics analyses published in "Epigenomic dynamics of human T-cell precursors reveal TCRA enhancer silencing by HOXA"
guillaumecharbonnier/mw-data
Metaworkflow module to store some medium size files needed by rules in mw-lib, e.g. for tests, capstarrseq, ...
guillaumecharbonnier/mw-gcthesis-oral
Metaworkflow plugin to compile my thesis oral presentation
guillaumecharbonnier/mw-ibrahim2022
Source code for the analyses published in "Transcriptomic studies of antidepressant action in rodent models of depression: a first meta-analysis"
guillaumecharbonnier/mw-miallot2021
Code for the analyses from the review "Metabolic landscapes in sarcomas"
guillaumecharbonnier/mw-miallot2022
Source code for the analyses published in "The coenzyme A precursor pantethine mitigates sarcoma growth through promotion of type 1 immunity"
guillaumecharbonnier/mw-pekowska2019
mw-broad
guillaumecharbonnier/Pan-B-cell-methylome
Code accompanying the findings in Duran-Ferrer 2020, Nat Cancer. The epiCMIT mitotic clock calculator and a Pan B-cell tumor classifier algorithm are provided.
guillaumecharbonnier/SJARACNe
Scalable Tool for Gene Network Reverse Engineering
guillaumecharbonnier/snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
guillaumecharbonnier/startbootstrap-freelancer
A flat design, one page, MIT licensed Bootstrap portfolio theme created by Start Bootstrap
guillaumecharbonnier/wopmars