Pinned Repositories
DAVPy
Course material for Data Analysis and Visualization with Python
Fundamentals_image_processing
Course material for fundamentals in digital image processing
microfilm
Creating figures and animations for multi-channel images with a focus on microscopy.
napari-convpaint
Segment images by pixel classification based on pre-trained convolutional layer feature extraction
napari-skimage
A minimal dependency napari plugin giving access to scikit-image functions
napari_demo
naparimovie
Create movies from series of key-frames in napari.
neubias_academy_biapy
NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter
NumpyPandas_course
Introduction to Numpy and Pandas
PyImageCourse_beginner
Course to learn basics of Python for image processing using Jupyter Notebooks
guiwitz's Repositories
guiwitz/neubias_academy_biapy
NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter
guiwitz/napari-annotation-project
A minimalistic napari plugin to create and save regions of interest and annotations on series of images
guiwitz/napari-morphodynamics
A napari plugin to use as interface for the morphodynamics package
guiwitz/napari-steinpose
A plugin to process Imaging Mass Cytometry data with cellpose and steinbock
guiwitz/PyMicrofluidics
Module for DXF microfluidics drawings
guiwitz/DAVPy_intro
Basic intro to Python and Jupyter for Data Analysis and Visualization with Python course
guiwitz/PythonTools
Course about tools used in the Python world: environments, IDEs, GitHub etc.
guiwitz/BernMICscripts
Collection of image processing scripts developed at the Microscopy Imaging Center of the University of Bern
guiwitz/EAAI
Repository for demo notebooks of the Applied Artificial Intelligence BFH course
guiwitz/napari-microfilm
Creating microfilm figures with napari screenshots
guiwitz/roidynamics
Analysis of intensity time-evolution in microscopy images
guiwitz/MLCV
Machine Learning for Computer Vision course
guiwitz/napari-guitils
Utils for napari plugin development
guiwitz/blog
guiwitz/CCI2023_ImageJMacro
A first intoduction to scripting in Fiji using the ImageJ Macro language.
guiwitz/codespaces_test
guiwitz/cookiecutter-napari-plugin
Cookiecutter for napari plugins
guiwitz/deepcell-tf
Deep Learning Library for Single Cell Analysis
guiwitz/DSL_CV2_PyTorch
Introduction course to Computer Vision 2: PyTorch. By the Data Science Lab at the University of Bern
guiwitz/mfdiffusion
guiwitz/napari-animation
guiwitz/napari-figure
a napari plugin to make figure
guiwitz/napari-openpiv
Napari plugin for OpenPIV Python
guiwitz/napari-workshop-template
A template for napari workshops
guiwitz/neubias2023
guiwitz/open-image-data
A handbook in producing and using open image data and pipelines.
guiwitz/pyadvcourse
guiwitz/pyrepo-cookiecutter
personal repo bootstrap
guiwitz/pyTFM
2 dimensional particle image velocimetry, traction force microscopy and monolayer stress microscopy
guiwitz/ZIDAS2023_python
Demo repo for Python intro