guma44
Scientific Software Engineer at Novartis Institutes for BioMedical Research (NIBR)
NovartisBasel, CH
Pinned Repositories
.vim
My Vim configuration files
cookiecutter-django-cms-docker
A cookiecutter template for the django CMS using docker
GEOparse
Python library to access Gene Expression Omnibus Database (GEO)
singularity
Singularity: Application containers for Linux
ushuffle
A useful tool for shuffling biological sequences while preserving the k-let counts
MIRZAG
MIRZA-G - Pipeline and model for miRNA target prediction
snoRNAHybridSearchPipeline
A pipeline to discover snoRNA-target chimeric reads in CLIP/HTS experiments.
guma44's Repositories
guma44/GEOparse
Python library to access Gene Expression Omnibus Database (GEO)
guma44/ushuffle
A useful tool for shuffling biological sequences while preserving the k-let counts
guma44/cookiecutter-django-cms-docker
A cookiecutter template for the django CMS using docker
guma44/singularity
Singularity: Application containers for Linux
guma44/.vim
My Vim configuration files
guma44/.bash
My bash configuration files
guma44/brivo
guma44/caper
Cromwell/WDL wrapper for Python
guma44/croo
Cromwell output organizer
guma44/django-modelcluster
Django extension to allow working with 'clusters' of models as a single unit, independently of the database
guma44/django-rest-framework
Web APIs for Django. 🎸
guma44/frontend-nanodegree-feedreader
guma44/guma44.github.io
guma44/gumiennikpl
guma44/i18n-todos
guma44/MetaProfile
Python package that facilitates making gene meta-profiles.
guma44/NeighbourhoodMap
Udacity project for neighbourhood map - breweries and brewpubs in Basel area.
guma44/pandas
Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
guma44/PiBrew
guma44/pisces
PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using Salmon.
guma44/piwowar
guma44/pyCLIP
A python package to deal with CLIP/z files and structures
guma44/recipe-app-api
guma44/simple-cython-example
A small project template that shows how to wrap C code into python using cython, along with other packaging concepts
guma44/sublime-text-conf
A collection of Sublime Text Snippets
guma44/truckmybudget
guma44/wdl
Workflow Description Language - Specification and Implementations