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WormPixel is a library of image analysis modules that can be plugged together to create custom image analysis applications
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WormPixel was originally developed to do high throughput biological assays on the genetic model organism C. elegans ("The Worm") but can be used for any image analysis task
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The advantage that WormPixel offers over more traditional image analysis packages is that the modules are built to cluster the granular image analysis tasks into a four maximum fundamental aggregates (1) tool calibration, (2) particle collection, (3) shape analysis, (4) data compilation/ figure generation, Thus allowing the rapid construction of custom image analysis applications from the fundamental aggregates.
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Because OneWorm is open source it allows a user to access and modify the granular image analysis tasks if needed.
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OneWorm is implemented in
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Version 1
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The modules are written as Matlab functions
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Refer to the architecture diagram
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Clone the repository and add it to your search path
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The output of each module is designed to take the input the previous module
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Dependencies: Matlab image processing package