/bwagpu

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

Primary LanguageCGNU General Public License v3.0GPL-3.0

BWA-MEM ON GPU

GPU implementation of BWA-MEM.

Requirements

  • CUDA >= 11.5
  • Any GPU with at least 12GB memory

Compile

  • Create a symlink from the cuda installation to /usr/local/cuda (CUDA installer should have alrady done this)
make

Usage

Same CLI usage as BWA-MEM