This repo is using for the FC ontology project replication
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Data Avaliable The raw data of T1-weight MRI, functional MRI, diffusion-weighted MRI, and behaviral data of the HCP-YA and HCP-D datasets are available at https://db.humanconnectome.org/. Gene expression data can be downloaded from the AHBA (http://human.brain-map.org) and processed using the abagen toolbox (https://github.com/rmarkello/abagen). The motion information of subject, the ontology score, the behaviral score of HCPA and HCPD dataset are aviliable in Datasets folder.
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Code use instruction The ontology construction code for all three different model in the paper can be found in folder: step1_ontology model.
The functional connectivity extraction code can be found in folder: step2_FC_construction.
The ridge regression model for predicting the cognitive ontology score, the Cognitive Ontology based Prediction Model (COPM) model, full-FC feature and the Ridge-regression based Connectome Predictive Model all are avilable in the folder: step3_ontology_prediction
step_4_0_secondorder_model_plot_and_networkpreporty_corr.R was used to plot Figure 2 and Figure 3.
step_4_1_bifactor_plot.R was used to plot Supplementary Figure 1.
step_4_2_More_task_interpretation.R was used to plot figure 3 and figure 4.
step_4_1_HCPD_plot.R was used to plot figure5.
step_final_diffthreshold_and_Glasser_atlas.R was used to replicate our main analysis on different threhold value and parcel resolution.