crowdsourcing

Crowdsourcing tools to construct datasets.

Dataset Format

Generic Format

{
    dataset : {
        # dataset parameters
    },
    workers : {
        worker_id : worker
    },
    images : {
        image_id : image
    }
    annos : [annotation],
    gt_labels : [gt_label]
}
worker : {
    
}

image : {

}

annotation : {
    image_id :
    worker_id :
    anno : {} # custom data for a specific annotation type
}

gt_label : {
    image_id :
    label : {}
}

Classification Format

dataset : {
    ...
    'num_classes' : int,
    'taxonomy_data' : taxonomy_data
}

taxonomy_data : [{
    key : int or str,
    parent : int or str,
    data : {}
}]

anno : {
    label : int or str
}


gt_label : {
    ...
    label : {
        label : int or str
    }
}

Detection Format

image : {
    ...
    width : int
    height : int
}

anno : {
    bboxes : [bbox]
}

bbox : {
    x : float (left edge in image coordinates)
    y : float (top edge in image coordinates)
    x2 : float (right edge in image coordinates)
    y2 : float (bottom edge in image coordinates)
    image_height : int
    image_width : int
}

(x, y) is the top left corner of the bounding box, and (x2, y2) is the bottom right corner of the bounding box.

Merging Binary Labels Example

This example demonstrates how to merge redundant binary annotations. This is a "static" usage of this code base in the sense that you have already collected your redundant annotations and you are looking to merge them into a single binary label for each image.

Dataset Format

The minimal JSON format for your data is:

{
    "dataset" : {},
    "images" : {},
    "workers" : {},
    "annos" : [
        {
            "anno" : {
                "label" : 0 or 1 # int
            },
            "image_id" : "0", # string 
            "worker_id" : "XYZ" # string
        },
        ... # more annotations
    ]   
}

In this minimal format, the only thing that needs to be provided is the annotations, each of which references an image and a worker. The dataset, images, and workers values are empty, but they should be present.

I'll assume that you created this data structure and saved it to a json file. The path to this json file will be referenced as RAW_DATASET. To confirm that you have your data in the correct format, you can run the following code snippet to print out stats on the number of images, workers, and annotations:

from collections import Counter
import json

import numpy as np

RAW_DATASET = '...' # Path to the crowdsourcing dataset

# Load in the raw dataset
with open(RAW_DATASET) as f:
  raw_dataset = json.load(f)

# Compute some stats on the images, workers and annotations
image_ids = [anno['image_id'] for anno in raw_dataset['annos']]
worker_ids = [anno['worker_id'] for anno in raw_dataset['annos']]

num_annos_per_image = Counter(image_ids)
num_images = len(num_annos_per_image)
avg_num_annos_per_image = np.mean(num_annos_per_image.values())
median_num_annos_per_image = np.median(num_annos_per_image.values())

num_annos_per_worker = Counter(worker_ids)
num_workers = len(num_annos_per_worker)
avg_num_annos_per_worker = np.mean(num_annos_per_worker.values())
median_num_annos_per_worker = np.median(num_annos_per_worker.values())

num_annotations = len(raw_dataset['annos'])
anno_labels = [anno['anno']['label'] for anno in raw_dataset['annos']]
num_yes_labels = sum(anno_labels)
num_no_labels = len(anno_labels) - num_yes_labels

# Print out the stats
print "%d Images" % (num_images,)
print "%0.3f average annotations per image" % (avg_num_annos_per_image,)
print "%d median annotations per image" % (median_num_annos_per_image,)
print
print "%d Workers" % (num_workers,)
print "%0.3f average annotations per worker" % (avg_num_annos_per_worker,)
print "%d median annotations per worker" % (median_num_annos_per_worker,)
print
print "%d Annotations" % (num_annotations,)
print "%d annotations == 1" % (num_yes_labels,)
print "%d annotations == 0" % (num_no_labels,)

# Check to see if a worker provided multiple annotations on the same image
image_id_worker_id_pairs = [(anno['image_id'], anno['worker_id']) for anno in raw_dataset['annos']]
if len(set(image_id_worker_id_pairs)) != len(image_id_worker_id_pairs):
  print "\nWARNING: at least one worker labeled an image multiple times. These duplicate annotations should be removed.\n"
  image_worker_counts = Counter(image_id_worker_id_pairs)
  for ((image_id, worker_id), c) in image_worker_counts.most_common():
    if c > 1:
      print "Worker %s annotated image %s %d times" % (worker_id, image_id, c)

This code snippet also checks to see if you have any duplicate annotations where a single worker labeled a single image multiple times. You should remove these duplicate annotations (perhaps by keeping the most recent annotation) before continuing.

Merging the Annotations to Produce a Combined Dataset

At this point we have a dataset in the correct format (stored at RAW_DATASET). We can now use the CrowdDatasetBinaryClassification class to merge the annotations. You'll need to add the path to the crowdsourcing repo to your PYTHONPATH environment variable. Something like:

export PYTHONPATH=$PYTHONPATH:/path/to/crowdsourcing

The following python code will do 3 things:

Loads the raw dataset from RAW_DATASET and creates a CrowdDatasetBinaryClassification instance.
Estimates the binary label for each image.
Saves the predicted labels as a combined dataset to COMBINED_DATASET (in JSON format).

from crowdsourcing.annotations.classification.binary import CrowdDatasetBinaryClassification

RAW_DATASET = '...' # Path to the crowdsourcing dataset
COMBINED_DATASET = '...' # Path to save the combined dataset

full_dataset = CrowdDatasetBinaryClassification(
    computer_vision_predictor=None, # No computer vision 
    estimate_priors_automatically=True, # Estimate pooled worker priors? Or leave them fixed? 
    min_risk = 0.02 # The minimum risk for an image to be considered finished (i.e. 98% confident)
)

# Load in the worker annotations
full_dataset.load(RAW_DATASET)

# Estimate the binary label for each image
full_dataset.estimate_parameters(avoid_if_finished=False)

# Get the finished annotations
image_id_to_finished = full_dataset.check_finished_annotations(set_finished=True)

num_finished = sum(image_id_to_finished.values())
print "%d / %d (%0.2f%%) images are finished" % (num_finished, len(image_id_to_finished), 100. * float(num_finished) / len(image_id_to_finished))

# Save the computed binary labels
full_dataset.save(
  COMBINED_DATASET,
  save_dataset=True,
  save_images=True,
  save_workers=True,
  save_annos=True,
  save_combined_labels=True
)

Parsing the Combined Dataset

We can retrieve the predicted label for each image and the risk of that label from the combined dataset:

COMBINED_DATASET = '...' # Path to the combined dataset

with open(COMBINED_DATASET) as f:
    combined_dataset = json.load(f)

image_id_to_predicted_label = {}
image_id_to_risk = {}
for label in combined_dataset['combined_labels']:
    image_id = label['image_id']
    pred_label = int(label['label']['label'])
    image_id_to_predicted_label[image_id] = pred_label

    risk = combined_dataset['images'][image_id]['risk']
    image_id_to_risk[image_id] = risk

# You can do further processing here...

Merging Bounding Boxes Example

This example demonstrates how to merge redundant bounding boxes to produce a dataset that can be used to train a detector (among other things). This is a "static" usage of this code base, in the sense that all of your annotations are collected, and you are looking to merge the redundant boxes to produce a "finished" dataset. This example makes use of the Annotation Tools repo for visualizing the dataset.

Dataset Format

You need to have your annotations in the following JSON format:

{
    "dataset" : {},
    "images" : {
        "0" : {
            "height" : 600,
            "width" : 800,
            "url" : "http://localhost:/images/0.jpg"
        },
        ... # more images
    },
    "workers" : {},
    "annos" : [
        {
            "anno" : {
                "bboxes" : [
                    {
                        "image_height" : 600,
                        "image_width" : 800,
                        "x" : 15,
                        "x2" : 330,
                        "y" : 75,
                        "y2" : 400
                    },
                    ... # more boxes
                ]
            },
            "image_id" : "0",
            "worker_id" : "XYZ"
        },
        ... # more annotations
    ]   
}

A few notes:

The dataset dictionary can be empty, but must be present.
You should have an entry for each image in the images dictionary where the key is the image id and the value is a dictionary containing the width and height of the image. The url field is not required, but it is convenient for visualizing the dataset.
The workers dictionary can be empty, but must be present. The code will create missing workers based on the data in the annos list. You can also populate this dictionary with worker specific information if it is convenient.
Because image ids and worker ids are used as keys in a JSON dictionary, they must be strings. Make sure to store string values for the image_id and worker_id fields when creating the annos list.
The annos field is a list, as opposed to a dictionary. Each item in the annos list represent the annotations completed by a single worker for a single image. The image id is stored in image_id, the worker id is stored in worker_id and the list of bounding boxes drawn by the worker are stored in bboxes in the anno dictionary. The bboxes should be a list of dictionaries, where each dictionary represents a single box that was drawn. If no boxes were drawn by the worker, then bboxes should be an empty list (i.e. bboxes : []). The values of image_height and image_width should be the same values that are stored in the width and height fields for the corresponding image (this is redundant, but necessary). The top left corner of the box is represented with x and y, and the bottom right corner of the box is represent with x2 and y2. The box coordinates should be in pixel space. The origin is the upper left hand corner.

I will assume that you have constructed the dataset and saved it. I'll assume that the RAW_DATASET variable holds the path to the dataset.

Visualize the Raw Dataset

It is recommended to visualize the raw worker annotations to ensure that you constructed the dataset format correctly. We will convert the raw dataset into a COCO representation and visualize the annotations using the Annotation Tools repo. Note that you need to have a url field for each image in order to visualize the dataset.

The following python code will convert your dataset to the COCO format and save it to the path stored in the RAW_COCO_DATASET variable:

import json

RAW_DATASET = '...' # Path to the crowdsourcing dataset
RAW_COCO_DATASET = '...' # Path to save the COCO dataset

with open(RAW_DATASET) as f:
    raw_dataset = json.load(f)

default_category_id = 0
annotations = []
anno_id = 0
for anno in raw_dataset['annos']:
    image_id = anno['image_id']
    for bbox in anno['anno']['bboxes']:
        x = bbox['x']
        y = bbox['y']
        x2 = bbox['x2']
        y2 = bbox['y2']

        w = x2 - x
        h = y2 - y

        annotations.append({
            'image_id' : image_id,
            'category_id' : default_category_id,
            'bbox' : [x, y, w, h],
            'id' : anno_id
        })
        anno_id += 1

coco_images = []
for image_id, image in raw_dataset['images'].iteritems():
    coco_images.append({
        'id' : image_id,
        'url' : image['url'],
        'width' : image['width'],
        'height' : image['height']
    })

categories = [{
    'id' : default_category_id,
    'name' : "Object",
    'supercategory': "Object"
}]

licenses = []
info = {}

coco_dataset = {
    "categories" : categories,
    "images" : coco_images,
    "annotations" : annotations,
    "licenses" : licenses,
    "info" : info
}

with open(RAW_COCO_DATASET, "w") as f:
    json.dump(coco_dataset, f)

In the annotation_tools/ repo, we can then load up the coco dataset to visualize the worker annotations:

# Clear the database (in case we were working on other annotations before)
python -m annotation_tools.db_dataset_utils \
--action drop

# Load in the dataset
python -m annotation_tools.db_dataset_utils \
--action load \
--dataset $RAW_COCO_DATASET \
--normalize

Make sure to start the webserver:

python run.py --port 8008

Then you can go to http://localhost:8008/edit_task/?start=0&end=100 to inspect the annotations on the first 100 images (sorted by image ids). Note that this interface does not render different worker's annotations separately, it simply renders them all together, so you should see redundant boxes on each object. We'll use the CrowdDatasetBBox class to merge the redundant annotations together.

Merging the Annotations to Produce a Combined Dataset

At this point we have a dataset in the correct format (stored at RAW_DATASET) and we have confirmed that the worker boxes were processed correctly. We can now use the CrowdDatasetBBox class to merge the annotations. You'll need to add the path to the crowdsourcing repo to your PYTHONPATH environment variable.

The following python code will do 4 things:

Loads the raw dataset from RAW_DATASET and creates a CrowdDatasetBBox instance.
Produces object location priors.
Estimates the boxes for each image.
Saves the predicted boxes as a combined dataset to COMBINED_DATASET.

from crowdsourcing.annotations.detection.bbox import CrowdDatasetBBox

RAW_DATASET = '...' # Path to the crowdsourcing dataset
COMBINED_DATASET = '...' # Path to save the combined dataset

full_dataset = CrowdDatasetBBox(
  debug=0,
  learn_worker_params=True,
  learn_image_params=True,
  estimate_priors_automatically=False,
  computer_vision_predictor=None,
  naive_computer_vision=False,
  min_risk=0.02
)
# Load in the worker annotations
full_dataset.load(RAW_DATASET)

# Generate object location priors using all of the worker annotations
box_set = full_dataset.get_big_bbox_set()

# Estimate the boxes for each image
full_dataset.estimate_parameters(avoid_if_finished=False)

# Get the finished annotations
image_id_to_finished = full_dataset.check_finished_annotations(set_finished=True)

num_finished = sum(image_id_to_finished.values())
print "%d / %d (%0.2f%%) images are finished" % (num_finished, len(image_id_to_finished), 100. * float(num_finished) / len(image_id_to_finished))

# Save the computed boxes
full_dataset.save(
  COMBINED_DATASET,
  save_dataset=True,
  save_images=True,
  save_workers=True,
  save_annos=True,
  save_combined_labels=True
)

Visualize the Combined Dataset

We can convert the combined dataset into a COCO style dataset and visualize the results. We'll store the COCO style dataset to the path store in COMBINED_COCO_DATASET. The below code is very similar to the above COCO conversion code, there is just a small change in the fields being accessed.

import json

COMBINED_DATASET = '...' # Path to the combined dataset
COMBINED_COCO_DATASET = '...' # Path to save the COCO dataset

with open(COMBINED_DATASET) as f:
    combined_dataset = json.load(f)

default_category_id = 0
annotations = []
anno_id = 0
for label in combined_dataset['combined_labels']:
    image_id = label['image_id']
    for bbox in label['label']['bboxes']:
        x = bbox['x']
        y = bbox['y']
        x2 = bbox['x2']
        y2 = bbox['y2']

        w = x2 - x
        h = y2 - y

        annotations.append({
            'image_id' : image_id,
            'category_id' : default_category_id,
            'bbox' : [x, y, w, h],
            'id' : anno_id
        })
        anno_id += 1

coco_images = []
for image_id, image in combined_dataset['images'].iteritems():
    coco_images.append({
        'id' : image_id,
        'url' : image['url'],
        'width' : image['width'],
        'height' : image['height']
    })

categories = [{
    'id' : default_category_id,
    'name' : "Object",
    'supercategory': "Object"
}]

licenses = []
info = {}

coco_dataset = {
    "categories" : categories,
    "images" : coco_images,
    "annotations" : annotations,
    "licenses" : licenses,
    "info" : info
}

with open(COMBINED_COCO_DATASET, "w") as f:
    json.dump(coco_dataset, f)

The CrowdDatasetBBox also computed the risk for each image and this value was saved in the combined dataset. We can sort the images by risk and visualize the riskiest images.

image_ids_and_risk = [(image['id'], image['risk']) for image in combined_dataset['images'].values()]
image_ids_and_risk.sort(key=lambda x: x[1])
image_ids_and_risk.reverse()

risky_image_ids = ",".join([x[0] for x in image_ids_and_risk[:100]])
print "Risky Image Visualization URL:"
print "http://localhost:8008/edit_task/?image_ids=%s" % (risky_image_ids,)

In the annotation_tools/ repo, we can then load up the coco dataset to visualize the combined annotations:

# Clear the database (to remove the worker annotations loaded up previously)
python -m annotation_tools.db_dataset_utils \
--action drop

# Load in the dataset
python -m annotation_tools.db_dataset_utils \
--action load \
--dataset $COMBINED_COCO_DATASET \
--normalize

Make sure the webserver is still running:

python run.py --port 8008

Then you can go to http://localhost:8008/edit_task/?start=0&end=100 to inspect the annotations on the first 100 images (sorted by image ids). You should hopefully see one box on each object. You can also visit the url that was printed above to visualize the 100 riskiest images. These images might need to be edited. If you make adjustments to the annotations, then you can export the dataset with:

$ python -m annotation_tools.db_dataset_utils \
--action export \
--output $UPDATED_COMBINED_COCO_DATASET \
--denormalize

The final version of your dataset will be saved at the path stored in UPDATED_COMBINED_COCO_DATASET.

gvanhorn38/crowdsourcing

crowdsourcing

Dataset Format

Generic Format

Classification Format

Detection Format

Merging Binary Labels Example

Dataset Format

Merging the Annotations to Produce a Combined Dataset

Parsing the Combined Dataset

Merging Bounding Boxes Example

Dataset Format

Visualize the Raw Dataset

Merging the Annotations to Produce a Combined Dataset

Visualize the Combined Dataset