This repository hosts raw data for "A comprehensive examination of Chelicerate genomes reveals no evidence for a whole genome duplication among spiders and scorpions" which is currently a pre-print on bioRxiv.
Find below the paths and descriptions to relevant files:
| Path | Description |
|---|---|
data/19spec/aln/ |
Nucleotide (and peptide) alignments used as input for species tree and gene tree inference. Also includes summary files for alignments. |
data/19spec/grampa/ |
GRAMPA results. |
data/19spec/trees/ |
The species trees and gene trees used in the study. |
data/Dot_Plots/ |
MCScanX results and dot plots. |
data/duppipe/ |
duppipe results and raw figures. |
data/orthopipe/ |
orthopipe results. |
manuscript/figs/ |
Raw figures from the manuscript. |
manuscript/scripts/ |
Scripts to generate the figures. |
manuscript/supplement/ |
Supplemental tables for the manuscript. |
scripts/ |
The scripts used for the analyses, from running BLAST to GRAMPA. |