/Chagos

Analyses of bacterial 16S rDNA amplicons in corals from the Chagos Islands

Primary LanguageR

Chagos Islands Coral-Associated Bacterial 16S Reads

Analyses of bacterial 16S rDNA amplicons in corals from the Chagos Islands

Raw sequence data has been deposited in the Sequence Read Archive under accession: PRJNA608014

File/Directory Contents
README.md This file
workflow.txt Steps to re-create all analyses
Chagos.Rproj R-Project file
R/ 01_Process_Raw_Data.R 02_Clean_and_Prepare_Processed_Data.R 03_Build_Phylogeny.R 04_Explore_Cleaned_Data.R 05_Differencial_Taxon_Abundance.R
metadata/ Chagos_PlateMpas_MetaData_1_Geoff.xlsx
output/ Phyloseq objects
output/figs/ Figures
output/trees/ Phylogenetic tree data
output/stats/ Statistical tables