File/Directory | Contents |
---|---|
README.md | This file |
workflow.txt | Steps to re-create all analyses |
Chagos.Rproj | R-Project file |
R/ | 01_Process_Raw_Data.R 02_Clean_and_Prepare_Processed_Data.R 03_Build_Phylogeny.R 04_Explore_Cleaned_Data.R 05_Differencial_Taxon_Abundance.R |
metadata/ | Chagos_PlateMpas_MetaData_1_Geoff.xlsx |
output/ | Phyloseq objects |
output/figs/ | Figures |
output/trees/ | Phylogenetic tree data |
output/stats/ | Statistical tables |