Pinned Repositories
adj2cytoscape
Convert the optput.adj from aracne to columm space delimited format ready to cytoscape
bioinformatics
Material para cursos de Bioinformática
bioinformatics_express
Introducción express a la Bioinfomática
ctx2VEP
Extracts the necessary columns in the output of BreakDance to submit them to VEP
documentacion
ExtendAlign
A computational algorithm for delivering multiple global alignment results originated from local alignments.
fastqc
csf fork of fastqc for usage on selected reads of unaligned bam file
flat-terminal
Flat design colours applied to terminal. Terminal is now sweeter than ever!
R_Basics_workshop
VBI_clusterProfiler
# Introducción a clusterProfiler
hachepunto's Repositories
hachepunto/R_Basics_workshop
hachepunto/bioinformatics
Material para cursos de Bioinformática
hachepunto/bioinformatics_express
Introducción express a la Bioinfomática
hachepunto/VBI_clusterProfiler
# Introducción a clusterProfiler
hachepunto/documentacion
hachepunto/ExtendAlign
A computational algorithm for delivering multiple global alignment results originated from local alignments.
hachepunto/gitignore
A collection of useful .gitignore templates
hachepunto/mk-adj2sif
automation with mk of the transformation of ARACNe files to sif files
hachepunto/mk-annotation
mk automation of annovar annotation using cosmic db
hachepunto/mk-bwa-mem
mk automatization BWA MEM align, BAM convert, Picard sort and samtools index
hachepunto/mk-corto
MK automation of corto
hachepunto/mk-ENA-submiter
MK automatization submit reads to European Nucleotide Archive using Webin command line submission interface
hachepunto/mk-extendAlign
mk automatic workflow for EA in the INMEGEN
hachepunto/mk-extract-sra
MK automation of sra to fastq conversion with fasterq-dump
hachepunto/mk-mappedto23andme
mk automatization to convert .map .ped plink format to so called "23 and me" format
hachepunto/mk-parallel-aracne
ARACNe parallel and automaticed
hachepunto/mk-singleCell-workflow
Single cell workflow using ddSeeker and Drop-seq tools
hachepunto/mk-trimgalore
MK-trim galore, a wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files.
hachepunto/mk-vcfdecompose
Decompose VCF using RTG Tools vcfdecompose
hachepunto/mk_corto_network
Correlation TF network using corto and MK
hachepunto/mk_daymet_mx_mun_daily
extract daymet daily info for Mexican municipalities
hachepunto/mk_daymet_mx_mun_mont
extract daymet mont average info for mx municipal
hachepunto/mk_GTKA_BaseRecalibrator
Base Recalibration of a bunch of bam files using GTKA BaseRecalibrator
hachepunto/mk_picard_markduplicates
Mark Duplicates of a bunch of bam files using Picard
hachepunto/mk_pindel
Automation Pindel detection of breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data
hachepunto/mk_star_index
Generate STAR index using mk
hachepunto/mk_star_singleend
mk auntomatizatión of single end alignment whit star
hachepunto/mk_svaba
MK - Structural variation and indel analysis by assembly
hachepunto/nodos-prueba
hachepunto/reproducibility_exercise
Ejercicio de reproducibilidad con RStudio