hacylu

Cellular-Diversity-Features

Extracting Cellular Diversity Features in Local Cell Cluster Graph from Histology Images

Classification-with-FeatureSelection

Routine tools for classification and feature selection using Matlab

FLocK

Code and GUI for Feature-driven Local Cell Graph (FLocK): New Computational Pathology based descriptors

Generalized-LoG-Filter-Nuclei-Detection

Automatic Nuclei Detection based on Generalized Laplacian of Gaussian Filters

Hagnifinder

Predicting Magnification of Digital Histological Images using Deep Learning

Multi-Pass-Adaptive-Voting

Multi-Pass Adaptive Voting for Nuclei Detection in Histopathological Images

Pathomics_Extraction

preanalytic_image_info

RadialLineScanning4MelanocyteSegmentation

A simple implementation of the radial line scanning method for melanocyte segmentation on skin histology image

SpaTIL

histomorphometrics that quantify the interaction of TILs and Tumor Cell

hacylu/FLocK

Code and GUI for Feature-driven Local Cell Graph (FLocK): New Computational Pathology based descriptors

hacylu/Hagnifinder

Predicting Magnification of Digital Histological Images using Deep Learning

hacylu/Cellular-Diversity-Features

Extracting Cellular Diversity Features in Local Cell Cluster Graph from Histology Images

hacylu/Generalized-LoG-Filter-Nuclei-Detection

Automatic Nuclei Detection based on Generalized Laplacian of Gaussian Filters

hacylu/RadialLineScanning4MelanocyteSegmentation

A simple implementation of the radial line scanning method for melanocyte segmentation on skin histology image

hacylu/Classification-with-FeatureSelection

Routine tools for classification and feature selection using Matlab

hacylu/Multi-Pass-Adaptive-Voting

Multi-Pass Adaptive Voting for Nuclei Detection in Histopathological Images

hacylu/Pathomics_Extraction

hacylu/preanalytic_image_info

hacylu/SpaTIL

histomorphometrics that quantify the interaction of TILs and Tumor Cell

hacylu/Utilities

Miscellaneous tools that may be helpful

hacylu/Cox-Survival-Model

A implementation of the Cox Proportional Hazard Model for building a regression model for time-to-event

hacylu/DigitalPathomicExtraction

Code to extract digital pathology features

hacylu/hacylu.github.io

hacylu/haralick_feature_nucleus_wise

Haralick feature nuclei-wise computation, instead of pixels wise within the nuclear surface. way more faster.The idea is 1) gather all pixels inside a nuclei surface 2) construct a Co-occurrence matrix based on all pixels within a nuclear surface 3) calculate the haralick features for each nucleus 4) do statistics

hacylu/MatSurv

Survival analysis in MATLAB

hacylu/oral_epi_segmentation

hacylu/PathLAKE_MasterClass2020

examples for the course

hacylu/pathology-he-auto-augment

H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.

hacylu/Smooth_Nuclear_Surface

show case Hybrid Morphological Reconstructions to smooth nuclear surface