haddocksoto
LLS Fellow at CDC (USA) Former postdoc in the @tcflab at UW-Madison.
Centers for Disease Control and PreventionAtlanta, GA
Pinned Repositories
barcoded_flu_analysis
Protocols and scripts used for WGS and amplicon sequencing of barcoded influenza A samples
H7N9_evolution_in_mammals
To accompany the manuscript entitled "Stochastic processes within hosts constrain adaptation of wildtype H7N9 avian influenza viruses to mammalian hosts"
haddocksoto.github.io
My personal website
miscellaneous_scripts
This is a collection of scripts/code that has proven useful in the past
modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
opxvassembly
opxvassembly repo
wisconsin_cryptic_lineages
Github repository to accompany the manuscript: Tracing the origin of SARS-CoV-2 Omicron-like Spike sequences detected in wastewater
H7N9_evolution_in_mammals
To accompany the manuscript entitled "Stochastic processes within hosts constrain adaptation of wildtype H7N9 avian influenza viruses to mammalian hosts"
haddocksoto's Repositories
haddocksoto/barcoded_flu_analysis
Protocols and scripts used for WGS and amplicon sequencing of barcoded influenza A samples
haddocksoto/H7N9_evolution_in_mammals
To accompany the manuscript entitled "Stochastic processes within hosts constrain adaptation of wildtype H7N9 avian influenza viruses to mammalian hosts"
haddocksoto/haddocksoto.github.io
My personal website
haddocksoto/miscellaneous_scripts
This is a collection of scripts/code that has proven useful in the past
haddocksoto/wisconsin_cryptic_lineages
Github repository to accompany the manuscript: Tracing the origin of SARS-CoV-2 Omicron-like Spike sequences detected in wastewater