cannot install devtio-napari 0.10.1 and conda=23.11.0 into the same environment

Question

cannot install devtio-napari 0.10.1 and conda=23.11.0 into the same environment

Opened this issue 8 months ago · 1 comments

I tried to install the latest conda and the latest devbio-napari in the same environment in order to get constructor to work with menuinst v2.0.2 (because menuinst v2 works also for mac and linux installers and is used by napari-menu).

However, mamba gave me dependency conflicts.

here is the install command I tried:

mamba create -n devbio-napari-env "python=3.11" "devbio-napari=0.10.1" pyqt pyrsistent "menuinst>=2.0.2" "conda>=23.11.0" mamba pip

detailed error log

Could not solve for environment specs
The following packages are incompatible
├─ devbio-napari 0.10.1**  is installable with the potential options
│  ├─ devbio-napari 0.10.1 would require
│  │  └─ libxml2 <=2.10.4  with the potential options
│  │     ├─ libxml2 [2.10.0|2.10.1|...|2.9.9], which can be installed;
│  │     ├─ libxml2 [2.9.3|2.9.4] would require
│  │     │  └─ vc 10.* , which does not exist (perhaps a missing channel);
│  │     ├─ libxml2 2.9.4 would require
│  │     │  └─ vc 10 , which does not exist (perhaps a missing channel);
│  │     └─ libxml2 [2.9.5|2.9.7] would require
│  │        └─ zlib 1.2.11 , which can be installed;
│  ├─ devbio-napari 0.10.1 would require
│  │  └─ __linux, which is missing on the system;
│  └─ devbio-napari 0.10.1 would require
│     └─ __osx, which is missing on the system;
├─ mamba is installable with the potential options
│  ├─ mamba [0.0.7|0.1.0] would require
│  │  └─ python >=3.6,<3.7.0a0 , which can be installed;
│  ├─ mamba [0.0.7|0.1.0] would require
│  │  └─ python >=3.7,<3.8.0a0 , which can be installed;
│  ├─ mamba [0.1.1|0.1.2|...|0.9.2] would require
│  │  ├─ python >=3.6,<3.7.0a0 , which can be installed;
│  │  └─ python_abi 3.6.* *_cp36m, which can be installed;
│  ├─ mamba [0.1.1|0.1.2|...|0.9.2] would require
│  │  ├─ python >=3.7,<3.8.0a0 , which can be installed;
│  │  └─ python_abi 3.7.* *_cp37m, which can be installed;
│  ├─ mamba [0.1.2|0.10.0|...|1.5.3] would require
│  │  ├─ python >=3.8,<3.9.0a0 , which can be installed;
│  │  └─ python_abi 3.8.* *_cp38, which can be installed;
│  ├─ mamba [0.10.0|0.11.1|...|1.5.3] would require
│  │  ├─ python >=3.9,<3.10.0a0 , which can be installed;
│  │  └─ python_abi 3.9.* *_cp39, which can be installed;
│  ├─ mamba [0.18.1|0.18.2|...|1.5.3] would require
│  │  ├─ python >=3.10,<3.11.0a0 , which can be installed;
│  │  └─ python_abi 3.10.* *_cp310, which can be installed;
│  ├─ mamba [0.25.0|0.26.0|...|1.2.0] would require
│  │  └─ python_abi 3.8 *_pypy38_pp73, which can be installed;
│  ├─ mamba [0.25.0|0.26.0|...|1.2.0] would require
│  │  └─ python_abi 3.9 *_pypy39_pp73, which can be installed;
│  ├─ mamba [1.0.0|1.1.0] would require
│  │  └─ conda >=4.8,<23.4  with the potential options
│  │     ├─ conda [22.11.1|22.9.0|...|4.14.0] would require
│  │     │  ├─ python >=3.10,<3.11.0a0 , which can be installed;
│  │     │  └─ python_abi 3.10.* *_cp310, which can be installed;
│  │     ├─ conda [22.11.1|22.9.0|...|23.9.0] would require
│  │     │  └─ menuinst >=1.4.11,<2  with the potential options
│  │     │     ├─ menuinst [1.4.11|1.4.12|1.4.13|1.4.14|1.4.16] would require
│  │     │     │  └─ python [2.7* |>=2.7,<2.8.0a0 ], which can be installed;
│  │     │     ├─ menuinst [1.4.11|1.4.12|1.4.13|1.4.14] would require
│  │     │     │  └─ python [3.5* |>=3.5,<3.6.0a0 ], which can be installed;
│  │     │     ├─ menuinst 1.4.11 would require
│  │     │     │  └─ python 3.6* , which can be installed;
│  │     │     ├─ menuinst [1.4.11|1.4.12|...|1.4.18] would require
│  │     │     │  └─ python >=3.6,<3.7.0a0 , which can be installed;
│  │     │     ├─ menuinst [1.4.11|1.4.13|...|1.4.19] would require
│  │     │     │  └─ python >=3.7,<3.8.0a0 , which can be installed;
│  │     │     ├─ menuinst [1.4.16|1.4.17|1.4.18] would require
│  │     │     │  ├─ python >=3.6,<3.7.0a0 , which can be installed;
│  │     │     │  └─ python_abi 3.6.* *_cp36m, which can be installed;
│  │     │     ├─ menuinst [1.4.16|1.4.17|1.4.18|1.4.19] would require
│  │     │     │  ├─ python >=3.7,<3.8.0a0 , which can be installed;
│  │     │     │  └─ python_abi 3.7.* *_cp37m, which can be installed;
│  │     │     ├─ menuinst [1.4.16|1.4.17|1.4.18|1.4.19] would require
│  │     │     │  └─ python >=3.8,<3.9.0a0 , which can be installed;
│  │     │     ├─ menuinst [1.4.16|1.4.17|...|2.0.2] would require
│  │     │     │  ├─ python >=3.8,<3.9.0a0 , which can be installed;
│  │     │     │  └─ python_abi 3.8.* *_cp38, which can be installed;
│  │     │     ├─ menuinst [1.4.16|1.4.17|...|2.0.2] would require
│  │     │     │  ├─ python >=3.9,<3.10.0a0 , which can be installed;
│  │     │     │  └─ python_abi 3.9.* *_cp39, which can be installed;
│  │     │     ├─ menuinst [1.4.18|1.4.19|1.4.20|2.0.2] would require
│  │     │     │  ├─ python >=3.10,<3.11.0a0 , which can be installed;
│  │     │     │  └─ python_abi 3.10.* *_cp310, which can be installed;
│  │     │     ├─ menuinst [1.4.19|1.4.20], which can be installed;
│  │     │     ├─ menuinst 1.4.19 would require
│  │     │     │  └─ python_abi 3.8 *_pypy38_pp73, which can be installed;
│  │     │     ├─ menuinst 1.4.19 would require
│  │     │     │  └─ python_abi 3.9 *_pypy39_pp73, which can be installed;
│  │     │     ├─ menuinst [1.4.19|1.4.20|2.0.2] would require
│  │     │     │  └─ python_abi 3.12.* *_cp312, which can be installed;
│  │     │     ├─ menuinst [1.4.19|1.4.20|2.0.2] would require
│  │     │     │  └─ pypy3.9 >=7.3.13 , which can be installed;
│  │     │     ├─ menuinst [1.4.16|1.4.17|1.4.18|1.4.19] would require
│  │     │     │  └─ python >=3.9,<3.10.0a0 , which can be installed;
│  │     │     └─ menuinst [1.4.17|1.4.19] would require
│  │     │        └─ python >=3.10,<3.11.0a0 , which can be installed;
│  │     ├─ conda [22.11.1|22.9.0|...|4.9.2] would require
│  │     │  ├─ python >=3.8,<3.9.0a0 , which can be installed;
│  │     │  └─ python_abi 3.8.* *_cp38, which can be installed;
│  │     ├─ conda [22.11.1|22.9.0|...|4.9.2] would require
│  │     │  ├─ python >=3.9,<3.10.0a0 , which can be installed;
│  │     │  └─ python_abi 3.9.* *_cp39, which can be installed;
│  │     ├─ conda [22.11.0|22.11.1|...|4.14.0] would require
│  │     │  └─ python >=3.10,<3.11.0a0 , which can be installed;
│  │     ├─ conda [22.11.0|22.11.1|...|4.9.2] would require
│  │     │  └─ python >=3.8,<3.9.0a0 , which can be installed;
│  │     ├─ conda [22.11.0|22.11.1|...|4.9.2] would require
│  │     │  └─ python >=3.9,<3.10.0a0 , which can be installed;
│  │     ├─ conda [22.9.0|4.10.0|...|4.9.2] would require
│  │     │  ├─ python >=3.7,<3.8.0a0 , which can be installed;
│  │     │  └─ python_abi 3.7.* *_cp37m, which can be installed;
│  │     ├─ conda [22.11.1|22.9.0|4.14.0] would require
│  │     │  └─ python_abi 3.8 *_pypy38_pp73, which can be installed;
│  │     ├─ conda [22.11.1|22.9.0|4.14.0] would require
│  │     │  └─ python_abi 3.9 *_pypy39_pp73, which can be installed;
│  │     ├─ conda [23.1.0|23.3.0|...|23.7.3] would require
│  │     │  └─ pypy3.8 >=7.3.11 , which can be installed;
│  │     ├─ conda [23.1.0|23.3.0|...|23.7.3] would require
│  │     │  └─ pypy3.9 >=7.3.11 , which can be installed;
│  │     ├─ conda [22.11.0|22.11.1|...|4.9.2] would require
│  │     │  └─ python >=3.7,<3.8.0a0 , which can be installed;
│  │     ├─ conda [4.10.0|4.10.1|...|4.9.2] would require
│  │     │  ├─ python >=3.6,<3.7.0a0 , which can be installed;
│  │     │  └─ python_abi 3.6.* *_cp36m, which can be installed;
│  │     ├─ conda [4.8.0|4.8.1|4.8.2|4.8.3] would require
│  │     │  └─ python >=2.7,<2.8.0a0 , which can be installed;
│  │     ├─ conda [4.10.0|4.10.1|...|4.9.2] would require
│  │     │  └─ python >=3.6,<3.7.0a0 , which can be installed;
│  │     └─ conda 4.8.3 would require
│  │        ├─ python >=2.7,<2.8.0a0 , which can be installed;
│  │        └─ python_abi 2.7.* *_cp27m, which can be installed;
│  ├─ mamba [1.2.0|1.3.0|...|1.5.1] would require
│  │  └─ conda [>=4.14,<23.4 |>=4.14,<23.9.0a0 ] with the potential options
│  │     ├─ conda [22.11.1|22.9.0|...|4.14.0], which can be installed (as previously explained);
│  │     ├─ conda [22.11.1|22.9.0|...|23.9.0], which can be installed (as previously explained);
│  │     ├─ conda [22.11.1|22.9.0|...|4.9.2], which can be installed (as previously explained);
│  │     ├─ conda [22.11.1|22.9.0|...|4.9.2], which can be installed (as previously explained);
│  │     ├─ conda [22.11.0|22.11.1|...|4.14.0], which can be installed (as previously explained);
│  │     ├─ conda [22.11.0|22.11.1|...|4.9.2], which can be installed (as previously explained);
│  │     ├─ conda [22.11.0|22.11.1|...|4.9.2], which can be installed (as previously explained);
│  │     ├─ conda [22.9.0|4.10.0|...|4.9.2], which can be installed (as previously explained);
│  │     ├─ conda [22.11.1|22.9.0|4.14.0], which can be installed (as previously explained);
│  │     ├─ conda [22.11.1|22.9.0|4.14.0], which can be installed (as previously explained);
│  │     ├─ conda [23.1.0|23.3.0|...|23.7.3], which can be installed (as previously explained);
│  │     ├─ conda [23.1.0|23.3.0|...|23.7.3], which can be installed (as previously explained);
│  │     ├─ conda 23.7.4 would require
│  │     │  └─ pypy3.9 >=7.3.12 , which can be installed;
│  │     └─ conda [22.11.0|22.11.1|...|4.9.2], which can be installed (as previously explained);
│  ├─ mamba [1.3.0|1.3.1|...|1.5.1] would require
│  │  └─ pypy3.8 >=7.3.11 , which can be installed;
│  ├─ mamba [1.3.0|1.3.1|...|1.5.0] would require
│  │  └─ pypy3.9 >=7.3.11 , which can be installed;
│  ├─ mamba [1.5.0|1.5.1] would require
│  │  └─ pypy3.9 >=7.3.12 , which can be installed;
│  ├─ mamba [1.5.1|1.5.2|1.5.3] would require
│  │  └─ pypy3.9 >=7.3.13 , which can be installed;
│  ├─ mamba [1.5.2|1.5.3] would require
│  │  └─ conda >=23.9,<23.11.0  with the potential options
│  │     ├─ conda [22.11.1|22.9.0|...|4.14.0], which can be installed (as previously explained);
│  │     ├─ conda [22.11.1|22.9.0|...|23.9.0], which can be installed (as previously explained);
│  │     ├─ conda [23.10.0|23.9.0] would require
│  │     │  └─ python_abi 3.12.* *_cp312, which can be installed;
│  │     ├─ conda [22.11.1|22.9.0|...|4.9.2], which can be installed (as previously explained);
│  │     ├─ conda [23.10.0|23.9.0] would require
│  │     │  └─ pypy3.9 >=7.3.13 , which can be installed;
│  │     ├─ conda [22.11.1|22.9.0|...|4.9.2], which can be installed (as previously explained);
│  │     ├─ conda [22.11.0|22.11.1|...|4.14.0], which can be installed (as previously explained);
│  │     ├─ conda [22.11.0|22.11.1|...|4.9.2], which can be installed (as previously explained);
│  │     └─ conda [22.11.0|22.11.1|...|4.9.2], which can be installed (as previously explained);
│  ├─ mamba [1.5.2|1.5.3] would require
│  │  └─ python_abi 3.12.* *_cp312, which can be installed;
│  └─ mamba [1.5.4|1.5.5|1.5.6] would require
│     └─ libmambapy [1.5.4 py310h04f2035_0|1.5.4 py311h0317a69_0|...|1.5.6 py39h993ce4e_0], which requires
│        └─ libmamba [1.5.4 h3f09ed1_0|1.5.5 h3f09ed1_0|1.5.6 h3f09ed1_0], which requires
│           └─ libarchive >=3.7.2,<3.8.0a0  but there are no viable options
│              ├─ libarchive 3.7.2 would require
│              │  ├─ libxml2 >=2.11.5,<2.12.0a0 , which conflicts with any installable versions previously reported;
│              │  └─ libzlib >=1.2.13,<1.3.0a0  but there are no viable options
│              │     ├─ libzlib 1.2.13 would require
│              │     │  └─ zlib 1.2.13 *_4, which conflicts with any installable versions previously reported;
│              │     └─ libzlib 1.2.13 would require
│              │        └─ zlib 1.2.13 *_5, which conflicts with any installable versions previously reported;
│              └─ libarchive 3.7.2 would require
│                 ├─ libxml2 >=2.12.2,<2.13.0a0 , which conflicts with any installable versions previously reported;
│                 └─ libzlib >=1.2.13,<1.3.0a0 , which cannot be installed (as previously explained);
├─ menuinst >=2.0.2  is installable with the potential options
│  ├─ menuinst [1.4.16|1.4.17|...|2.0.2], which can be installed (as previously explained);
│  ├─ menuinst [1.4.16|1.4.17|...|2.0.2], which can be installed (as previously explained);
│  ├─ menuinst [1.4.18|1.4.19|1.4.20|2.0.2], which can be installed (as previously explained);
│  ├─ menuinst [1.4.19|1.4.20|2.0.2], which can be installed (as previously explained);
│  ├─ menuinst [1.4.19|1.4.20|2.0.2], which can be installed (as previously explained);
│  └─ menuinst 2.0.2 conflicts with any installable versions previously reported;
└─ python 3.11**  is not installable because it conflicts with any installable versions previously reported.

If I relax the devbio-napari version, it works but it tries to install v 0.8:

mamba create -n devbio-napari-env "python=3.11" devbio-napari pyqt pyrsistent "menuinst>=2.0.2" "conda>=23.11.0" mamba pip

Answer 1 · 2024-01-15T22:43:18.000Z

package versions that would be installed with relaxed devbio-napari version constraints

Looking for: ['python=3.11', 'devbio-napari', 'pyqt', 'pyrsistent', "menuinst[version='>=2.0.2']", "conda[version='>=23.11.0']", 'mamba', 'pip']

conda-forge/win-64 Using cache
conda-forge/noarch Using cache
pkgs/main/noarch No change
pkgs/main/win-64 No change
pkgs/r/win-64 No change
pkgs/msys2/noarch No change
pkgs/msys2/win-64 No change
pkgs/r/noarch No change
Transaction

Prefix: C:\Users\Till\mambaforge\envs\dbn

Updating specs:

python=3.11
devbio-napari
pyqt
pyrsistent
menuinst[version='>=2.0.2']
conda[version='>=23.11.0']
mamba
pip

Package Version Build Channel e

Install:

libexpat 2.5.0 h63175ca_1 conda-forge Cad
ucrt 10.0.22621.0 h57928b3_0 conda-forge Cad
python_abi 3.11 4_cp311 conda-forge Cad
ca-certificates 2023.11.17 h56e8100_0 conda-forge Cad
intel-openmp 2023.2.0 h57928b3_50497 conda-forge Cad
msys2-conda-epoch 20160418 1 conda-forge Cad
pandoc 3.1.3 h57928b3_0 conda-forge Cad
winpty 0.4.3 4 conda-forge Cad
expat 2.5.0 h63175ca_1 conda-forge Cad
vc14_runtime 14.38.33130 h82b7239_18 conda-forge Cad
m2w64-libwinpthread-git 5.0.0.4634.697f757 2 conda-forge Cad
m2w64-gmp 6.1.0 2 conda-forge Cad
vs2015_runtime 14.38.33130 hcb4865c_18 conda-forge Cad
vc 14.3 hcf57466_18 conda-forge Cad
m2w64-gcc-libs-core 5.3.0 7 conda-forge Cad
libsodium 1.0.18 h8d14728_1 conda-forge Cad
libzopfli 1.0.3 h0e60522_0 conda-forge Cad
lzo 2.10 he774522_1000 conda-forge Cad
eigen 3.4.0 h91493d7_0 conda-forge Cad
x264 1!164.3095 h8ffe710_2 conda-forge Cad
libopus 1.3.1 h8ffe710_1 conda-forge Cad
libogg 1.3.4 h8ffe710_1 conda-forge Cad
rav1e 0.6.6 h975169c_2 conda-forge B
dav1d 1.2.1 hcfcfb64_0 conda-forge Cad
yaml 0.2.5 h8ffe710_2 conda-forge Cad
openh264 2.4.0 h63175ca_0 conda-forge 4B
aom 3.7.1 h63175ca_0 conda-forge B
x265 3.5 h2d74725_3 conda-forge Cad
zlib-ng 2.0.7 hcfcfb64_0 conda-forge Cad
snappy 1.1.10 hfb803bf_0 conda-forge Cad
libbrotlicommon 1.1.0 hcfcfb64_1 conda-forge B
svt-av1 1.7.0 h63175ca_0 conda-forge B
libaec 1.1.2 h63175ca_1 conda-forge Cad
jxrlib 1.1 hcfcfb64_3 conda-forge Cad
giflib 5.2.1 h64bf75a_3 conda-forge Cad
lz4-c 1.9.4 hcfcfb64_0 conda-forge Cad
libiconv 1.17 hcfcfb64_2 conda-forge Cad
pthreads-win32 2.9.1 hfa6e2cd_3 conda-forge Cad
fftw 3.3.10 nompi_h38027f0_108 conda-forge Cad
reproc 14.2.4.post0 hcfcfb64_1 conda-forge Cad
yaml-cpp 0.8.0 h63175ca_0 conda-forge Cad
fmt 10.1.1 h181d51b_1 conda-forge Cad
libwebp-base 1.3.2 hcfcfb64_0 conda-forge Cad
libjpeg-turbo 3.0.0 hcfcfb64_1 conda-forge Cad
icu 73.2 h63175ca_0 conda-forge Cad
tk 8.6.13 h5226925_1 conda-forge Cad
openssl 3.2.0 hcfcfb64_1 conda-forge Cad
xz 5.2.6 h8d14728_0 conda-forge Cad
libzlib 1.2.13 hcfcfb64_5 conda-forge Cad
libffi 3.4.2 h8ffe710_5 conda-forge Cad
bzip2 1.0.8 hcfcfb64_5 conda-forge Cad
khronos-opencl-icd-loader 2023.04.17 h64bf75a_0 conda-forge Cad
zfp 1.0.1 h63175ca_0 conda-forge Cad
libdeflate 1.19 hcfcfb64_0 conda-forge Cad
charls 2.4.2 h1537add_0 conda-forge B
lerc 4.0.0 h63175ca_0 conda-forge Cad
libsqlite 3.44.2 hcfcfb64_0 conda-forge Cad
m2w64-gcc-libgfortran 5.3.0 6 conda-forge Cad
zeromq 4.3.4 h0e60522_1 conda-forge Cad
libvorbis 1.3.7 h0e60522_0 conda-forge Cad
libbrotlidec 1.1.0 hcfcfb64_1 conda-forge B
libbrotlienc 1.1.0 hcfcfb64_1 conda-forge 2B
libavif 1.0.1 h7a9aacb_3 conda-forge 1B
gettext 0.21.1 h5728263_0 conda-forge Cad
reproc-cpp 14.2.4.post0 h63175ca_1 conda-forge Cad
krb5 1.21.2 heb0366b_0 conda-forge Cad
libclang13 15.0.7 default_h77d9078_3 conda-forge Cad
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napari-mouse-controls 0.1.3 pyhd8ed1ab_0 conda-forge Cad
napari-folder-browser 0.1.3 pyhd8ed1ab_0 conda-forge Cad
napari-curtain 0.1.1 pyhd8ed1ab_0 conda-forge Cad
napari-workflow-optimizer 0.1.4 pyhd8ed1ab_0 conda-forge Cad
napari-accelerated-pixel-and-object-classification 0.14.0 pyhd8ed1ab_0 conda-forge Cad
napari-assistant 0.4.4 pyhd8ed1ab_0 conda-forge Cad
the-segmentation-game 0.2.0 pyhd8ed1ab_0 conda-forge Cad
napari-plot-profile 0.2.2 pyhd8ed1ab_0 conda-forge Cad
napari-clusters-plotter 0.6.1 pyhd8ed1ab_0 conda-forge B
napari-simpleitk-image-processing 0.4.5 pyhd8ed1ab_0 conda-forge Cad
napari-segment-blobs-and-things-with-membranes 0.3.6 pyhd8ed1ab_0 conda-forge Cad
napari-pyclesperanto-assistant 0.22.1 pyhd8ed1ab_0 conda-forge Cad
devbio-napari 0.8.1 win_h08f2357_0 conda-forge B
mamba 1.5.6 py311h8cb466b_0 conda-forge B

Summary:

Install: 422 packages

Total download: 162MB

Confirm changes: [Y/n]