haesleinhuepf/napari-laptrack

Turned visualization of Tracks Layer on 3D+t data

Opened this issue · 4 comments

marabuuu commented

If I run use the plugin on a 3D+t dataset (Platynereis dumerilii from Ozpolat, B. et al licensed by CC BY 4.0) the visualization of the Tracks layer is turned compared to the Image and Label Layer:

napari-laptrack turned visualization 1
napari-laptrack turned visualization 2
Best,
Mara

yfukai commented
image

I confirmed this, thanks @marabuuu! Let me have a close look.

  • 👍1
tonyv143 commented

Hi @marabuuu @yfukai . I have encountered this issue with my own tracking project. It doesn't seem like there has been an update but I thought I would check in case it has been resolved elsewhere?

yfukai commented

Unfortunately the corresponding PR #21 is still open and not merged into the main branch. I'll reimplement this plugin whenever I have time, but maybe you could try installing that branch by pip install git+https://github.com/yfukai/napari-laptrack@fix_3D_centroid_track_bugand see if it satisfies your need @tonyv143.

tonyv143 commented

Yes, that seems to have resolved the issue! Many thanks @yfukai

  • 👍1