Pinned Repositories
bash-tap
A basic bash port of a Test::More/Test::Builder-style TAP-compliant test library.
Complete-Striped-Smith-Waterman-Library
cpp_progress_bar
C++ function that implements a progress bar in console applications
DYNAMIC
Dynamic succinct/compressed data structures
fastahack
utilities for indexing and sequence extraction from FASTA files
fermi-lite
Standalone C library for assembling Illumina short reads in small regions
filevercmp
filevercmp function as in sort --version-sort
FREEC
Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data
fsom
A tiny C library for managing SOM (Self-Organizing Maps) neural networks
gbwt
Substring index for paths in a graph
hakon-jon's Repositories
hakon-jon/Complete-Striped-Smith-Waterman-Library
hakon-jon/cpp_progress_bar
C++ function that implements a progress bar in console applications
hakon-jon/fermi-lite
Standalone C library for assembling Illumina short reads in small regions
hakon-jon/FREEC
Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data
hakon-jon/gbwt
Substring index for paths in a graph
hakon-jon/gfakluge
A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
hakon-jon/googletest
Google Test
hakon-jon/gperftools
Main gperftools repository
hakon-jon/gssw
efficient alignment of strings to partially ordered string graphs
hakon-jon/htslib
C library for high-throughput sequencing data formats
hakon-jon/intervaltree
a minimal C++ interval tree implementation
hakon-jon/Jellyfish
A fast multi-threaded k-mer counter
hakon-jon/lancet
Microassembly based somatic variant caller for NGS data
hakon-jon/libdivsufsort
A lightweight suffix-sorting library
hakon-jon/lichee
Multi-sample cancer phylogeny reconstruction
hakon-jon/lru_cache
A thread-safe LRU cache implementation in C++
hakon-jon/manta
Structural variant and indel caller for mapped sequencing data
hakon-jon/pinchesAndCacti
Library for constructing pinch graphs and cactus graphs
hakon-jon/protobuf
Protocol Buffers - Google's data interchange format
hakon-jon/rocksdb
A library that provides an embeddable, persistent key-value store for fast storage.
hakon-jon/RUFUS
RUFUS k-mer based genomic variant detection
hakon-jon/SARS-CoV-2-epi-model
hakon-jon/sdsl-lite
Succinct Data Structure Library 2.0
hakon-jon/sha1
SHA-1 implementation in C++
hakon-jon/smithwaterman
smith-waterman-gotoh alignment algorithm
hakon-jon/sparsehash
C++ associative containers
hakon-jon/vcflib
a simple C++ library for parsing and manipulating VCF files, + many command-line utilities
hakon-jon/vg
tools for working with genome variation graphs
hakon-jon/vim
The official Vim repository
hakon-jon/vimHJ