Ira Hall lab

United States of America

Pinned Repositories

cluster_intro
Hall Lab Computing 101
2 8 00
competitive-alignment
Language:Shell10 3 02
fastqtl
Fork of FastQTL for SVs
Language:C++5 6 412
gtex
GTEx analysis scripts
Language:Python20 5 18
long-read-validation
Long-read validation of BEDPE structural variation
Language:Python9 5 13
speedseq
A flexible framework for rapid genome analysis and interpretation
Language:C314 46 145116
sv-pipeline
Pipeline for structural variation detection in cohorts
Language:WDL46 10 1120
sv_paper_042020
supplementary data for abel et al paper
4 11 01
svtools
Tools for processing and analyzing structural variants.
Language:Python148 18 17254
svtyper
Bayesian genotyper for structural variants
Language:Python125 10 8455

Ira Hall lab's Repositories

hall-lab/speedseq
A flexible framework for rapid genome analysis and interpretation
Language:C314 46 145116
hall-lab/svtools
Tools for processing and analyzing structural variants.
Language:Python148 18 17254
hall-lab/svtyper
Bayesian genotyper for structural variants
Language:Python125 10 8455
hall-lab/sv-pipeline
Pipeline for structural variation detection in cohorts
Language:WDL46 10 1120
hall-lab/gtex
GTEx analysis scripts
Language:Python20 5 18
hall-lab/competitive-alignment
Language:Shell10 3 02
hall-lab/long-read-validation
Long-read validation of BEDPE structural variation
Language:Python9 5 13
hall-lab/fastqtl
Fork of FastQTL for SVs
Language:C++5 6 412
hall-lab/1kg_sv_comparison
Language:Python4 7 01
hall-lab/assembly_validation
Language:Python4 10 01
hall-lab/extract_sv_reads
Tool for extracting splitter or discordant reads from a BAM or CRAM file.
Language:Python4 7 50
hall-lab/sv_paper_042020
supplementary data for abel et al paper
4 11 01
hall-lab/bamkit
Tools for common BAM file manipulations
Language:Python2 6 26
hall-lab/cluster_intro
Hall Lab Computing 101
2 8 00
hall-lab/cromwell-deployment
Scripts and configuration to setup a Cromwell deployment
Language:Python2 10 43
hall-lab/cshl_sv_2016
Language:Python2 7 0
hall-lab/io
i/o tools
Language:Python2 7 1
hall-lab/gatk4-germline-snv-pipeline
GATK4 pipeline for joint variant calling (SNP/INDELs)
Language:WDL1 10 01
hall-lab/tenx-gcp
Run 10X Genomics Software in Google Cloud Deployments
Language:Python1 7 00
hall-lab/ArrowGrid
Language:Shell1 0
hall-lab/CADD-scripts
CADD scripts release for offline scoring. For more information about CADD, please visit our website
Language:Python8 0
hall-lab/cloud-polices
Language:Python2 0
hall-lab/crimson
Bioinformatics tool outputs converter to JSON or YAML
Language:Python1 0
hall-lab/cromulent
Language:Python9 0
hall-lab/FinnSV_paper_1220
The summary statistics of FinMetSeq SV paper
hall-lab/lah
Local Assembly of Haplotypes
Language:Python9 0
hall-lab/lumpy-sv
lumpy: a general probabilistic framework for structural variant discovery
Language:C5 01
hall-lab/old-laims
Language:Python10 21
hall-lab/pipelines-api-examples
Examples for the Google Genomics Pipelines API.
Language:Python7 0
hall-lab/soup
Catch-all for uncategorized or project-specific scripts 🍵
Language:C6 02