`--strict` doesnt work with autoOpt

[Tony-xy-Liu]

cmd:

singularity run ./saber-master.sif
saber recruit -t 4
-l ./read_list.txt
-m ./SRR10053317.asm.fa
-s ./SRR10053317_bin00.fa
-o ./saber_test

std out:

Loading/Building subcontigs for Metagenomes: 1
File specified, processing SRR10053317_bin00.fa
Starting MinHash Recruitment
MinHash already done
Cleaning up intermediate files...
MinHash Recruitment Algorithm Complete
Starting Abundance Data Transformation
Building SRR10053317.asm abundance matrix
Raw reads in interleaved file...
Running minimap2-sr on SRR10053317
Converting SAM to BAM with SamTools
Sort BAM with SamTools
Cleaning up intermediate files...

Calculating Coverage with jgi_summarize_bam_contig_depths
Cleaning up intermediate files...
Starting Tetranucleotide Data Transformation
Calculating tetramer Hz matrix for SRR10053317.asm
Running AutoOpt to find optimal hyperparameters
Loading Reference Renyi Entropy profiles
Calculating Renyi Entropy profile
100%|█████████████████████████████████████████████| 8/8 [00:00<00:00, 57.06it/s]
AutoOpt method: algo_defaults
Parameter set: Strict
De Novo min_cluster_size: 50
De Novo min_samples: 15
Anchored min_cluster_size: 150
Anchored min_samples: 5
Anchored nu: 0.6
Anchored gamma: 0.1
Traceback (most recent call last):
File "/opt/conda/envs/saber_cenv/bin/saber", line 8, in
sys.exit(main())
File "/opt/conda/envs/saber_cenv/lib/python3.7/site-packages/saber/main.py", line 45, in main
cmd(sys.argv[2:])
File "/opt/conda/envs/saber_cenv/lib/python3.7/site-packages/saber/commands.py", line 141, in recruit
clusters = clst.runClusterer(mg_id, save_dirs_dict[recruit_s.mode], save_dirs_dict[recruit_s.mode],
KeyError: 'strict'

[RyloByte]

Hey Tony,
Thanks for the message. I have rebuilt the docker recently.
Could you rebuild the singularity SIF and give it another test?
singularity pull docker://quay.io/hallamlab/saber
Let me know how it goes.
Ryan

[RyloByte]

I think I have fixed this with some recent pushes to master