hanchenphd/GMMAT

Issues

• Error: inv_sympd(): matrix is singular or not positive definite

  #62 opened 6 months ago
  6

• Is unordered multi classification or ordered multi classification variable supported?

  #61 opened 7 months ago
  3

• Can SMMAT work for small sample size?

  #60 opened 8 months ago
  8

• Use of GMMAT GLMM approach for predictive modelling

  #58 opened 8 months ago
  3

• Error in GMMAT

  #57 opened a year ago
  3

• SMMAT n.p==0 Error

  #56 opened a year ago
  1

• Class probabilities in output

  #55 opened a year ago
  2

• SMMAT not reading grouping file

  #54 opened a year ago
  6

• Heritability (h2) estimation

  #53 opened a year ago
  3

• Parallelization glmm.wald

  #50 opened a year ago
  3

• ERROR glmm.wald()

  #49 opened a year ago
  2

• Meta-analysis for single score test

  #48 opened 2 years ago
  0

• glmm.score segmentation fault

  #47 opened 2 years ago
  3

• Group file sorted differently in SMMAT vs. SMMAT.meta

  #46 opened 2 years ago
  4

• Error in glmm.wald(): "the leading minor of order # is not positive definite"

  #45 opened 2 years ago
  1

• Error in readLines(infile) : 'con' is not a connection - glmm.wald test

  #44 opened 2 years ago
  6

• Error in glm.score

  #43 opened 2 years ago
  13

• Error in glmm.score basic_string::substr: __pos (which is 18446744073709551615) > this->size() (which is 0)

  #42 opened 3 years ago
  1

• Meta-analysis P-value decreases, despite same direction and marginally significant in both populations

  #41 opened 3 years ago
  2

• Error in eval(parse(text = x, keep.source = FALSE)[[1L]]) : object 'SNP__' not found

  #40 opened 3 years ago
  5

• Using dosages from text file or VCF

  #39 opened 3 years ago
  6

• Error in Single Variant Wald Test

  #38 opened 3 years ago
  7

• Meta-analysis for single score test error

  #37 opened 3 years ago
  1

• Issue when building the null model

  #36 opened 3 years ago
  4

• burden effect size in SMMAT

  #35 opened 3 years ago
  2

• glmm.wald. SNP names in when infile is gds

  #33 opened 3 years ago
  3

• how to add SNP*time interaction in glmmkin and glmm.score?

  #31 opened 3 years ago
  4

• glmm.wald producing NA output

  #30 opened 3 years ago
  2

• How could I get the group definition file?

  #29 opened 3 years ago
  4

• matric is singular or not positive definite issue

  #28 opened 3 years ago
  3

• p values for betas

  #27 opened 3 years ago
  1

• Calculate effect size for minor allele (A1) in the glmm.wald() test

  #26 opened 3 years ago
  2

• Error reading bimfile

  #25 opened 3 years ago
  5

• How can I calculate Odds ratio or Z-score from the outcome of glmm.score?

  #24 opened 3 years ago
  2

• Variance estimate on the boundary of the parameter space observed, refitting model...

  #23 opened 3 years ago
  7

• Saddlepoint approximation in `.pKuonen()`

  #22 opened 3 years ago
  4

• glmmkin is slow with a large sample size

  #21 opened 3 years ago
  3

• glmm.wald exporting all NAs

  #20 opened 4 years ago
  1

• glmm.wald returning only NAs

  #19 opened 4 years ago
  1

• glmm.wald exporting only NA

  #18 opened 4 years ago
  5

• Test freezes

  #17 opened 3 years ago
  15

• Changelog for 1.3.1?

  #16 opened 3 years ago
  1

• ANOVA between 2 glmkin models

  #14 opened 3 years ago
  1

• Progress bar for SMMAT

  #13 opened 4 years ago
  2

• core dump error

  #11 opened 4 years ago
  6

• Multiple kins for multivariate analysis?

  #10 opened 4 years ago
  6

• P-value from glmmkin

  #9 opened 4 years ago
  9

• glmmkin is incompatible with tibbles

  #8 opened 3 years ago
  2

• Issue when adjusting for many covariates

  #7 opened 4 years ago
  2

• Inflation observed for O.minp

  #6 opened 4 years ago
  2