Pinned Repositories
Behavior
Matlab scripts for analysis of mouse behavior.
Ex-vivo-ephys-toolset
A series of Matlab scripts to import analyze slice electrophysiology recordings collected with Pclamp (Molecular Devices).
Fipster
Build your own camera-based multi-fiber and multi-color fiber photometry (FIP) system!
handejong.github.io
My personal website
handy_automated_neuroexplorer
A set of MATLAB scripts to quickly align microscopy data with the Allen Brain Atlas.
Head-fixed-setup-Arduino-code
Arduino code for running the head-fixed setup, fiber photometry setup and other things that Arduinos are better at than humans.
in-vivo_ephys
MATLAB code for clustering and analysis of in-vivo electrophysiology data obtained using conventional (opto) tetrodes.
inscopy
A set of Python scripts to load and analyze Inscopix miniscope data.
J_Clust
A complete, MATLAB-based spike-sorting package for extracellular electrode/tetrode recordings
post-kilosort
Python-based toolkit to import and analyse Neuropixel probes data that was previously processed using Kilosort 3.0.
handejong's Repositories
handejong/Ex-vivo-ephys-toolset
A series of Matlab scripts to import analyze slice electrophysiology recordings collected with Pclamp (Molecular Devices).
handejong/handy_automated_neuroexplorer
A set of MATLAB scripts to quickly align microscopy data with the Allen Brain Atlas.
handejong/inscopy
A set of Python scripts to load and analyze Inscopix miniscope data.
handejong/post-kilosort
Python-based toolkit to import and analyse Neuropixel probes data that was previously processed using Kilosort 3.0.
handejong/Behavior
Matlab scripts for analysis of mouse behavior.
handejong/Fipster
Build your own camera-based multi-fiber and multi-color fiber photometry (FIP) system!
handejong/handejong.github.io
My personal website
handejong/Head-fixed-setup-Arduino-code
Arduino code for running the head-fixed setup, fiber photometry setup and other things that Arduinos are better at than humans.
handejong/in-vivo_ephys
MATLAB code for clustering and analysis of in-vivo electrophysiology data obtained using conventional (opto) tetrodes.
handejong/J_Clust
A complete, MATLAB-based spike-sorting package for extracellular electrode/tetrode recordings
handejong/minima
Minima is a one-size-fits-all Jekyll theme for writers.