hanh1985

hanh1985's Stars

• junegunn/vim-plug

  :hibiscus: Minimalist Vim Plugin Manager

  Language:Vim Script33.9k3771k1.9k

• Xfennec/progress

  Linux tool to show progress for cp, mv, dd, ... (formerly known as cv)

  Language:C8.5k140111312

• amaas/stanford_dl_ex

  Programming exercises for the Stanford Unsupervised Feature Learning and Deep Learning Tutorial

  2.6k236171.6k

• ckreibich/scholar.py

  A parser for Google Scholar, written in Python

  Language:Python2.1k10181777

• lh3/bwa

  Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

  Language:C1.5k108305552

• rstudio/tensorflow

  TensorFlow for R

  Language:R1.3k92423317

• metachris/pdfx

  Extract text, metadata and references (pdf, url, doi, arxiv) from PDF. Optionally download all referenced PDFs.

  Language:Python1k3943113

• ContinuumIO/docker-images

  Repository of Docker images created by Anaconda

  Language:Dockerfile81691151283

• pachterlab/kallisto

  Near-optimal RNA-Seq quantification

  Language:C64747365170

• marcelm/cutadapt

  Cutadapt removes adapter sequences from sequencing reads

  Language:Python51123721129

• CrossRef/pdfextract

  MOVED TO https://gitlab.com/crossref/pdfextract

  Language:Ruby508403589

• seqan/seqan

  SeqAn's official repository.

  Language:C++47142779171

• deweylab/RSEM

  RSEM: accurate quantification of gene and isoform expression from RNA-Seq data

  Language:C++40822195118

• nanopore-wgs-consortium/NA12878

  Data and analysis for NA12878 genome on nanopore

  Language:Python373538793

• lukasz-wronski/vscode-ftp-sync

  Ftp Sync plugin for Visual Studio Code

  Language:JavaScript3202333085

• genome/bam-readcount

  Count bases in BAM/CRAM files

  Language:CMake298559095

• OpenGene/awesome-bio-datasets

  awesome-bio-datasets

  21518042

• AstraZeneca-NGS/VarDict

  VarDict

  Language:Perl1875212861

• knmnyn/ParsCit

  An open-source CRF Reference String Parsing Package

  Language:Perl155232947

• OpenGene/MutScan

  Detect and visualize target mutations by scanning FastQ files directly

  Language:C149221538

• datarootsio/artyfarty

  ggplot2 theme + palette presets

  Language:R961028

• paultpearson/TDAmapper

  (R package) Analyze High-Dimensional Data Using Discrete Morse Theory

  Language:HTML7213929

• mateidavid/nanocall

  An Oxford Nanopore Basecaller

  Language:C++71122119

• OpenGene/OpenGene.jl

  (No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia

  Language:Julia64141615

• OpenGene/CfdnaPattern

  Pattern Recognition for Cell-free DNA

  Language:Python5815320

• sfu-compbio/sinvict

  SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA

  Language:C++275158

• PeterUlz/Nucleosome_ctDNA

  Inferring expressed genes by whole-genome sequencing of plasma DNA

  Language:R1613

• WGLab/icages

  iCAGES (integrated CAncer GEnome Score) is an effective tool for prioritizing cancer driver genes for a patient

  Language:Perl131337

• Sage-Bionetworks-Challenges/SMC-RNA-Challenge

  Language:C++981313

• NimbleGen/bioinformatics

  Bioinformatics tools developed at Roche NimbleGen

  Language:Java43