Pinned Repositories
cluster-examples
CSKS
Coalescent simulations for k-mer spectra
Euphrasia-demographic-modelling
Code, data, and dadi fits relating to Brown et al. 2022
EuphrasiaGS
Scripts and data for Becher et al. 2021
genome-size-variation
Investigating genome size variation with k-mers
hannesbecher.github.io
hybidisation_ancestry
Simple simulation of local ancestry after hybridisation and drift.
MADN
Mensch ärgere dich nicht
shiny-k-mers
Tetemer, an R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraploids (allo and auto)
pseudogene_quantification
Repo accompanying our manuscript on quantifying extra-nuclear inserts from population-level low-pass sequencing data
hannesbecher's Repositories
hannesbecher/shiny-k-mers
Tetemer, an R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraploids (allo and auto)
hannesbecher/CSKS
Coalescent simulations for k-mer spectra
hannesbecher/MADN
Mensch ärgere dich nicht
hannesbecher/excess-variance
Excess variance in k-mer spectra
hannesbecher/2211-polyploidy-seminar
hannesbecher/AlphaPeel
AlphaPeel: calling, phasing, and imputing genotype and sequence data in pedigrees
hannesbecher/AlphaSimR
R package for breeding program simulations
hannesbecher/ApproxBayes.jl
Approximate Bayesian Computation (ABC) algorithms for likelihood free inference in julia
hannesbecher/cave-logs
Recording and analysing man cave climate data
hannesbecher/continuous-predictors
hannesbecher/degeneracy
Get 0-fold and 4-fold degeneracy sites
hannesbecher/EsAndEls.jl
hannesbecher/high-dimensional-stats-r
High-Dimensional Statistics
hannesbecher/HRI
hannesbecher/ibdStuff
hannesbecher/julia-moon
hannesbecher/likelihood-censored-poisson
hannesbecher/metaMaterials
hannesbecher/msprime
Simulate genealogical trees and genomic sequence data using population genetic models
hannesbecher/myTemplates
hannesbecher/OrchardGame.jl
hannesbecher/peds
hannesbecher/quick-infer-ts
hannesbecher/test-pipe
Test pipeline for queue submission on Eddie
hannesbecher/test-tree-seqs
Generate tree sees for testing and demonstration
hannesbecher/tiles
hannesbecher/tree_seq_pipeline
Pipeline to infer tree sequences with different datasets
hannesbecher/TSKITetude
TSKIT tutorials
hannesbecher/tszip
Gzip-like compression for tskit tree sequences
hannesbecher/wettstein1932
Data and re-analyses from Wettstein's 1932 chapter on bryophyte genetics