Pinned Repositories
3Dmol.js
WebGL accelerated JavaScript molecular graphics library
AGFusion
Python package to annotate and visualize gene fusions.
akt
Ancestry and Kinship Tools
cancerTiming
DeepLearning-500-questions
深度学习500问，以问答形式对常用的概率知识、线性代数、机器学习、深度学习、计算机视觉等热点问题进行阐述，以帮助自己及有需要的读者。 全书分为17个章节，20多万字。由于水平有限，书中不妥之处恳请广大读者批评指正。 未完待续............ 如有意合作，联系scutjy2015@163.com 版权所有，违权必究 Tan 2018.06
elasticstack
:card_index: Configurable indexing and other extras for Haystack (with ElasticSearch biases)由于haystack不支持配置elasticsearch的mapping等功能，这个包就是做这个配置的，比如咱们可以支持某个字段用jieba中文分词，另外一个字段用snowball英文分词，非常好。
meth-report-generator
甲基化报告自动化
somatic_pipeline
肿瘤体细胞突变检测流程（组织、cfDNA均可，需要有对照）
wechat_spider
抓取某微信公众号所有历史文章列表及其内容
haoziyeung's Repositories
haoziyeung/cancerTiming
haoziyeung/awesome-cancer-variant-databases
A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.
haoziyeung/bootstrap
The most popular HTML, CSS, and JavaScript framework for developing responsive, mobile first projects on the web.
haoziyeung/django-guardian
Per object permissions for Django，对象级的权限管理，粒度更细
haoziyeung/django-mptt
Utilities for implementing a modified pre-order traversal tree in django.树形结构
haoziyeung/Duplex-Sequencing
haoziyeung/fastx_toolkit
FASTA/FASTQ pre-processing programs
haoziyeung/gtz
A high performance and compression ratio compressor, powered by GTXLab of Genetalks. 感觉很牛逼的样子，做fastq压缩的
haoziyeung/HLA
xHLA: Fast and accurate HLA typing from short read sequence data
haoziyeung/hts-specs
一些高通量相关文件的介绍
haoziyeung/iCallSV
A Framework to call Structural Variants from NGS based datasets,MSKCC-IMPACT PANEL采用的SV calling流程，包括注释等，功能较多，考虑使用。
haoziyeung/IMPACT-Pipeline
Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay
haoziyeung/indentLine
A vim plugin to display the indention levels with thin vertical lines vim python缩进虚线插件
haoziyeung/lumpy-sv
lumpy: a general probabilistic framework for structural variant discovery
haoziyeung/mint
A pipeline for the integration of DNA methylation and hydroxymethylation data，甲基化、羟甲基化分析流程
haoziyeung/mutation-signatures
Create mutation signatures from MAF's, and decompose them into Stratton signatures
haoziyeung/pileup.js
Interactive in-browser track viewer这个和igv.js有点像
haoziyeung/pronto
本体论，obo文件解析，不过没有leaf to root这种方法，另外一个模块有，不过这个支持owl，可以用这个模块吧owl转换为obo，再用另外一个模块
haoziyeung/PyLOH
Deconvolving tumor purity and ploidy by integrating copy number alterations and loss of heterozygosity可以做肿瘤纯度的分析
haoziyeung/python-docx-template
Use a docx as a jinja2 template
haoziyeung/reportIT
IonTorrent variant reporting pipeline for clinical interpretation of cancer panel results.IonTorrent自动报告系统
haoziyeung/svviz
Read visualizer for structural variants
haoziyeung/THetA
Tumor Heterogeneity Analysis (THetA) is an algorithm that estimates the tumor purity and clonal/subclonal copy number aberrations directly from high-throughput DNA sequencing data. Please note that the latest release is now called THetA2.也可以做肿瘤纯度分析,并且支持WXS，比ABSOLUTE范围广一些，而且发表日期更新一些，不过ABS是发在NG上的...
haoziyeung/tsnad
Detecting somatic mutations and predicting tumor-specific neo-antigens
haoziyeung/ultra_rare_pheno_spectrum
罕见变异的打分
haoziyeung/use_vim_as_ide
use vim as IDE
haoziyeung/VCF-kit
VCF-kit: Assorted utilities for the variant call format
haoziyeung/vim-airline
lean & mean status/tabline for vim that's light as air
haoziyeung/work_src
存放我工作的一些文件，当然，都是一些非机密文件啦
haoziyeung/XX-Net
a web proxy tool