harisankarsadasivan
Software Profiling & Acceleration handle: My closed source contribution: https://github.com/hsadasivan/mm2-ax
University of MichiganAnn Arbor
Pinned Repositories
centrifuge
Classifier for metagenomic sequences
convolve
Simple demonstration of separable convolutions
cpp-examples-ml
Legacy OpenCV Machine Learning Examples (2.4.x, C++)
DTWax
Accelerated Dynamic Time Warping for ONT Read Until
event_detection
Event detection for nanopore sequencing
fast-cpp-csv-parser
fast-cpp-csv-parser
fast5
A C++ header-only library for reading Oxford Nanopore Fast5 files
graphmap
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html
kmer_models
Predictive kmer models for development use
RawMap
Complements Minimap2 for a fast and efficient Read-Until pipeline
harisankarsadasivan's Repositories
harisankarsadasivan/RawMap
Complements Minimap2 for a fast and efficient Read-Until pipeline
harisankarsadasivan/DTWax
Accelerated Dynamic Time Warping for ONT Read Until
harisankarsadasivan/centrifuge
Classifier for metagenomic sequences
harisankarsadasivan/convolve
Simple demonstration of separable convolutions
harisankarsadasivan/cpp-examples-ml
Legacy OpenCV Machine Learning Examples (2.4.x, C++)
harisankarsadasivan/event_detection
Event detection for nanopore sequencing
harisankarsadasivan/fast-cpp-csv-parser
fast-cpp-csv-parser
harisankarsadasivan/fast5
A C++ header-only library for reading Oxford Nanopore Fast5 files
harisankarsadasivan/graphmap
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html
harisankarsadasivan/kmer_models
Predictive kmer models for development use
harisankarsadasivan/LORA
Long Read Assembler
harisankarsadasivan/ncbi-genome-download
Scripts to download genomes from the NCBI FTP servers
harisankarsadasivan/python-logistic-regression-demos
python logistic regression demos
harisankarsadasivan/ReadUntilAccelerator
harisankarsadasivan/UNCALLED
harisankarsadasivan/harisankarsadasivan.github.io
Hari's homepage
harisankarsadasivan/kmer_count
prints top n kmers and frequency from piped input