Functionality is covered by more recent more flexible tool: k8analysis.
Run sambamba flagstat in kubernetes
Note: k8-flagstat is not used in pipeline5. The results of k8-flagstat are not guaranteed to be identical to the flagstat created by pipeline5.
Need to have the right credentials and a cluster (only need this step once).
gcloud container clusters get-credentials rerun-cluster --region europe-west4 --project hmf-crunch>Run ./k8-flagstat for a description of available commands and their usage.
Input and output paths need to be paths in GCP buckets.
kubectl get jobs | grep <your-job-name>
kubectl get pods | grep <your-job-name>
kubectl logs <your-pod-name>