hasindu2008/squigulator

Genomic region simulation

hiruna72 opened this issue · 0 comments

Provide an argument to pass a genomic region.
For example simulate full contig or reads for the region chr22:20,293,718-20,294,757 of the human genome.
Please note that the region should be able to given as it appears on IGV (with commas).

squigulator hg38noAlt.fa -x dna-r9-prom -o reads.blow5 -n 150000 --region chr22:20,293,718-20,294,757