hiruna72
PhD student at UNSW and Garvan Institute of Medical Research
School of Computer Science & Engineering, UNSW, SydneySydney, Australia
Pinned Repositories
slow5lib
slow5lib is a software library for reading & writing SLOW5 files.
slow5tools
Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.
artic_c
C/C++ implementation of ARTIC bioinformatics platform for nanopore sequencing of nCoV2019 novel coronavirus
f5n
Genopo a.k.a. F5N - a portable DNA analysis toolkit for nanopore data https://nanoporetech.com
f5n_server
This is a job server to distribute sequencing tasks and keep track of clients
htslib
[CMake build] C library for high-throughput sequencing data formats
miniKF_example_pipeline
use miniKF to understand kubernetes, kubeflow better by creating a small pipeline
poregen
Collect raw signal event samples for k-mers from an event alignment file
slow5-dorado
A LibTorch Basecaller for Oxford Nanopore Reads
squigualiser
Visualise and analyse nanopore (ONT) raw signals
hiruna72's Repositories
hiruna72/squigualiser
Visualise and analyse nanopore (ONT) raw signals
hiruna72/slow5-dorado
A LibTorch Basecaller for Oxford Nanopore Reads
hiruna72/artic_c
C/C++ implementation of ARTIC bioinformatics platform for nanopore sequencing of nCoV2019 novel coronavirus
hiruna72/poregen
Collect raw signal event samples for k-mers from an event alignment file
hiruna72/f5n
Genopo a.k.a. F5N - a portable DNA analysis toolkit for nanopore data https://nanoporetech.com
hiruna72/f5n_server
This is a job server to distribute sequencing tasks and keep track of clients
hiruna72/bcftools
This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
hiruna72/bioawk
BWK now can write output to files and can be built using CMake
hiruna72/bioconda-recipes
Conda recipes for the bioconda channel.
hiruna72/bonito
A PyTorch Basecaller for Oxford Nanopore Reads
hiruna72/cepdnaclk.github.io
hiruna72/ds1018
ML - credit card information
hiruna72/f5c
Attempt for a faster implementation of Nanopolish call-methylation in C
hiruna72/faq
Frequently Asked Questions
hiruna72/fieldbioinformatics
The ARTIC field bioinformatics pipeline
hiruna72/genopo
product details
hiruna72/hiruna72.github.io
hiruna72/libbthread
bionic library that provide some missing posix threading function
hiruna72/llvm-project
The LLVM Project is a collection of modular and reusable compiler and toolchain technologies. Note: the repository does not accept github pull requests at this moment. Please submit your patches at http://reviews.llvm.org.
hiruna72/minimap2-arm
A versatile pairwise aligner for genomic and spliced nucleotide sequences
hiruna72/nanopolish
Signal-level algorithms for MinION data
hiruna72/ont_h5_validator
hiruna72/ProgrammingAssignment2
Repository for Programming Assignment 2 for R Programming on Coursera
hiruna72/project_blue_crab
pod5 to slow5 conversion
hiruna72/seq
A high-performance, Pythonic language for bioinformatics
hiruna72/sigmap
A streaming method for mapping nanopore raw signals
hiruna72/slow5_compression_techniques
try different compression techniques for slow5 format
hiruna72/slow5tools
hiruna72/UNCALLED
Raw nanopore signal mapper that enables real-time targeted sequencing
hiruna72/USB-Interface